Detailed information of component protein


Summary

Component ID T6CP002382
Component protein type TssB
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (166 a.a.); Nucleotide sequence (498 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) SARI_RS12295
Coordinate (Strand) 2558381..2558878 (-)
NCBI ID WP_000785632.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1.7e-50 8..158

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 166 a.a.    

>T6CP002382 NC_010067:c2558878-2558381 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssB]
MADSSFQNEVPKARVNIQLDLHTGSAQKKVELPLKLLAVGNFSNGKETLPLSERSKLNISKNNFNSVLSELNPEVSIDVA
NTLRGDGSEENIKLSFSEMKDFEPEAIAKQIPQLRAMLAMRNLLRDLKSNLLDNAEFRRSLETILKDPALSEELRQELNA
LAPAE*

  Nucleotide sequence: 498 bp    

>T6CP002382 NC_010067:c2558878-2558381 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssB]
ATGGCAGATTCCAGCTTCCAGAATGAAGTGCCAAAAGCACGCGTCAACATCCAGCTTGACCTGCACACGGGTTCCGCCCA
AAAGAAAGTAGAGTTGCCCTTAAAACTTCTCGCGGTGGGAAACTTCAGCAACGGCAAAGAAACCCTCCCGCTTTCTGAAC
GCAGTAAGTTAAATATTTCCAAAAACAACTTTAATAGCGTTCTGTCCGAGCTTAACCCAGAGGTCAGCATTGATGTTGCT
AATACCCTGAGAGGTGATGGTTCTGAAGAAAATATCAAACTCAGCTTTTCTGAAATGAAAGATTTCGAGCCTGAAGCAAT
AGCAAAGCAAATTCCTCAACTTCGTGCCATGTTAGCCATGCGTAATCTCCTTCGAGACCTCAAGTCAAACCTCCTGGATA
ATGCCGAGTTTCGCAGATCTCTTGAAACCATACTGAAAGACCCGGCTCTGAGCGAAGAATTAAGACAAGAACTGAATGCC
CTTGCACCTGCCGAATAA