SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP002382
Component protein type	TssB
T6SS ID (Type)	T6SS00237 (Type i2)
Strain	Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon	chromosome
Sequence	Protein sequence (166 a.a.); Nucleotide sequence (498 bp)
Reference	[1] Blondel CJ, Jiménez JC, Contreras I, et al. Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes. BMC Genomics. 2009 Aug 4;10:354. doi: 10.1186/1471-2164-10-354. PMID: 19653904

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	SARI_RS12295
Coordinate (Strand)	2558381..2558878 (-)
NCBI ID	WP_000785632.1
RefSeq	NC_010067
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_VipA	PF05591.14	1.7e-50	8..158

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 166 a.a.

						>T6CP002382 NC_010067:c2558878-2558381 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssB]
MADSSFQNEVPKARVNIQLDLHTGSAQKKVELPLKLLAVGNFSNGKETLPLSERSKLNISKNNFNSVLSELNPEVSIDVA
NTLRGDGSEENIKLSFSEMKDFEPEAIAKQIPQLRAMLAMRNLLRDLKSNLLDNAEFRRSLETILKDPALSEELRQELNA
LAPAE*					

Nucleotide sequence: 498 bp

						>T6CP002382 NC_010067:c2558878-2558381 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssB]
ATGGCAGATTCCAGCTTCCAGAATGAAGTGCCAAAAGCACGCGTCAACATCCAGCTTGACCTGCACACGGGTTCCGCCCA
AAAGAAAGTAGAGTTGCCCTTAAAACTTCTCGCGGTGGGAAACTTCAGCAACGGCAAAGAAACCCTCCCGCTTTCTGAAC
GCAGTAAGTTAAATATTTCCAAAAACAACTTTAATAGCGTTCTGTCCGAGCTTAACCCAGAGGTCAGCATTGATGTTGCT
AATACCCTGAGAGGTGATGGTTCTGAAGAAAATATCAAACTCAGCTTTTCTGAAATGAAAGATTTCGAGCCTGAAGCAAT
AGCAAAGCAAATTCCTCAACTTCGTGCCATGTTAGCCATGCGTAATCTCCTTCGAGACCTCAAGTCAAACCTCCTGGATA
ATGCCGAGTTTCGCAGATCTCTTGAAACCATACTGAAAGACCCGGCTCTGAGCGAAGAATTAAGACAAGAACTGAATGCC
CTTGCACCTGCCGAATAA					