Detailed information of component protein


Summary

Component ID T6CP002381
Component protein type TssC
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (516 a.a.); Nucleotide sequence (1548 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SARI_RS12290
Coordinate (Strand) 2556798..2558345 (-)
NCBI ID WP_048908568.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.3e-122 90..390
VipB_2 PF18945.2 3.8e-38 400..510
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 516 a.a.    

>T6CP002381 NC_010067:c2558345-2556798 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssC]
ILMSVNAETQSVQGNTTVLENNPDSVYASLFEKINLNPVSRLGDITEYQDESVMADASADERVTAAIQVFMQVISKSGQL
VEKLDKSLLDSHIAELDYQISRQLDEVMHHPEFQRVESLWRGLKHTVDRTDFRQNVKIEILDVSKDDLRQDFEDAPEIIQ
SGLYHHTYSMEYDQPGGEPIAAIISSYEFDSSAQDVALLRNISKVSAAAHMPFIGSVGPKFFHKSSMEEVAAIKDIGNYF
DRAEYIKWKAFRDSEDSRYIGLTMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHEKYLWTNASFAFAANMVKSFINNGWC
VQIRGPQAGGAVQDLPIHLYDLGTGNQVKIPSEVMIPETREFEFSNLGFIPLSYYKNRDYSCFFSANSAQKPALYDTADA
TANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVKGLVTEMTDPGDDLQASHPLRDAKVIVEDIED
NPGFFRVKLFAVPHFQVEGIDVNLSLVSQMPKAKA*

  Nucleotide sequence: 1548 bp    

>T6CP002381 NC_010067:c2558345-2556798 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssC]
ATACTGATGTCTGTGAATGCTGAAACACAATCGGTGCAGGGGAACACTACTGTACTTGAGAATAACCCAGACAGCGTGTA
TGCCTCGCTGTTTGAAAAAATTAATCTGAATCCAGTTTCTCGCCTGGGTGACATTACTGAATATCAGGACGAGAGCGTCA
TGGCCGATGCCTCGGCAGATGAGCGAGTGACCGCAGCCATTCAGGTTTTTATGCAGGTTATTTCAAAATCAGGCCAACTA
GTTGAGAAACTTGATAAATCGTTGCTTGATTCGCATATCGCAGAACTTGATTATCAAATTAGTCGCCAGCTCGATGAAGT
TATGCACCACCCGGAGTTTCAACGCGTTGAGTCACTCTGGCGCGGACTTAAGCACACGGTTGATCGCACAGATTTCCGCC
AGAATGTAAAAATAGAAATACTTGATGTTTCTAAAGACGATCTGCGTCAGGATTTTGAAGACGCTCCGGAGATTATCCAG
AGTGGCCTTTATCACCATACTTATTCGATGGAATACGATCAACCGGGTGGAGAGCCTATCGCTGCAATCATTTCGTCGTA
TGAATTCGATTCCTCCGCTCAGGATGTAGCGTTACTCCGCAATATATCAAAAGTTTCAGCTGCCGCTCATATGCCGTTTA
TTGGTTCTGTAGGACCGAAATTCTTCCATAAATCCAGCATGGAAGAAGTCGCGGCCATCAAAGACATCGGTAACTATTTT
GACAGAGCTGAATATATCAAATGGAAAGCGTTCCGTGACTCTGAGGACTCCCGCTATATTGGGCTGACTATGCCACGAGT
GTTGGGCCGTCTGCCGTATGGTCCGGATACCGTCCCGGTACGCAGTTTCAACTATGTGGAGGAAGTGAAGGGACCTGATC
ACGAGAAGTATTTATGGACGAATGCGTCGTTTGCCTTTGCTGCCAATATGGTGAAAAGTTTTATCAATAACGGCTGGTGC
GTCCAAATTCGTGGCCCTCAGGCTGGCGGTGCAGTTCAGGATCTGCCTATCCACCTGTACGACCTCGGTACCGGTAATCA
GGTAAAAATCCCGTCCGAAGTGATGATACCGGAAACCCGTGAGTTTGAATTCTCGAATCTGGGATTCATTCCGCTAAGCT
ATTATAAAAACAGAGATTATTCCTGTTTCTTCAGCGCGAATTCCGCCCAGAAGCCTGCATTGTACGACACTGCGGATGCG
ACCGCCAACAGCCGCATCAATGCCCGTCTGCCATACATCTTCCTGTTGTCACGTATCGCGCACTACCTGAAGCTCATCCA
GCGTGAAAATATCGGTACCACCAAAGACCGTCGCCTGCTTGAGCTGGAGCTTAATACCTGGGTGAAAGGTCTGGTAACTG
AAATGACCGATCCGGGCGATGACCTCCAGGCTTCACACCCGCTTCGCGATGCCAAAGTCATCGTTGAAGACATCGAGGAC
AACCCGGGTTTCTTCCGCGTGAAACTCTTTGCCGTCCCTCACTTCCAGGTTGAAGGCATAGACGTCAACCTGTCGCTGGT
ATCCCAGATGCCTAAAGCAAAAGCATAA