Detailed information of component protein


Summary

Component ID T6CP002379
Component protein type TssH
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (891 a.a.); Nucleotide sequence (2673 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SARI_RS12265
Coordinate (Strand) 2549741..2552413 (-)
NCBI ID WP_000399947.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.9e-39 616..780
AAA_lid_9 PF17871.3 1.1e-30 383..472
ClpB_D2-small PF10431.11 2.5e-11 786..861
AAA PF00004.31 5e-08 243..355
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 891 a.a.    

>T6CP002379 NC_010067:c2552413-2549741 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssH]
MEHHSAVLLRRLNPYCARALEGAASLCQARAHAEITPEHWLLKLLEQGEGDLTVLARRYEWDMDAVWQSLLSWLDAQPRS
VRTRPELSASLQTLVKQAWLAATLAGDEQIRSIHLLTAMIETSGLTRCDGLWPLMTLTTSQLERLRPLLEAQSDERHDVT
LSEQPGNVSIIGRAAPLQHEAQHQSEGGSVQPAVSQEESVLNRFTVDVTARAREGKIDPVFGRDNEIRQMVDILSRRRKN
NPILVGEPGVGKTALVEGLALRIAEGNVPESLKPVIVRTLDLGLLQAGAGVKGEFEQRLKNIIDAVQHFPVPVLLFIDEA
HTIIGAGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDDTACLMLRGLKSRYAEH
HGVHITGEAVRAAVTLSRRYLTGRQLPDKAVDLLDTAAARVRMSLDTLPEQLTRLQAELTALAMEQQELLEDISLGNAVD
ASRLPQIEQLSLELNQQKAALQSQYETEKQLTDSLKACREDISRQEELSALQHELSQIQNNSPLLGLDVDVRTVATVIAD
WTGVPLSSLMKDEQTELLTLEEQLATRVVGQGPALNAIAERMRASKTGLTPENGQQGVFLLVGPSGVGKTETALALADVM
YGGEKSLITINLSEYQEPHTVSQLKGSPPGYVGYGQGGILTEAVRKRPYSVVLLDEVEKAHRDVMNLFYQVFDRGFMRDG
EGREIDFRNTVILMTSNLGSDPLMQFLEEQPEATESDLHELLRPILRDHFQPALLARFQTVIYRPLEMDAMRTIVGIKLA
QVSTRLQRHYGISTHIGESLFDTLTKACLLTDTGARNVDSLLNQQILPVLSQQLLSHMAAKQKPSSLQLTWDDEEGIVLA
FDAQVEGEPS*

  Nucleotide sequence: 2673 bp    

>T6CP002379 NC_010067:c2552413-2549741 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssH]
ATGGAACATCATTCAGCAGTCCTGCTACGACGACTTAACCCTTATTGCGCCAGAGCACTGGAGGGGGCGGCTTCTTTATG
TCAGGCCCGTGCGCATGCAGAAATCACGCCTGAGCACTGGTTGCTGAAACTGCTGGAGCAGGGGGAAGGTGACCTGACCG
TTCTTGCCCGGCGCTATGAATGGGATATGGATGCCGTCTGGCAGTCGCTCCTGAGCTGGCTGGATGCACAGCCTCGTTCA
GTTCGCACACGCCCGGAGCTTTCTGCTTCCCTCCAGACCTTAGTGAAACAGGCGTGGCTTGCCGCCACGCTCGCGGGAGA
TGAGCAGATCCGCAGCATACATTTGCTCACGGCCATGATTGAAACGTCAGGGCTGACACGCTGCGATGGCCTCTGGCCTT
TGATGACGCTGACCACCAGCCAGCTGGAAAGGTTACGTCCCTTGCTGGAAGCCCAGTCGGATGAGCGGCATGACGTTACG
CTCAGTGAGCAGCCTGGCAATGTCAGCATTATTGGCCGGGCCGCACCGTTACAGCATGAAGCACAACACCAGTCTGAAGG
CGGAAGTGTGCAGCCTGCCGTTTCACAGGAAGAGTCCGTTCTCAATCGCTTTACGGTCGATGTGACCGCCCGTGCCCGGG
AAGGAAAGATTGACCCGGTCTTTGGACGCGATAACGAAATCCGTCAGATGGTGGATATTCTCTCCAGACGCCGTAAGAAC
AACCCGATCCTCGTGGGTGAACCCGGCGTGGGCAAAACGGCCCTGGTTGAAGGCCTGGCGCTGCGTATTGCTGAGGGCAA
TGTGCCCGAAAGTCTTAAGCCCGTCATCGTCAGGACACTGGATCTGGGTTTGCTTCAGGCGGGTGCCGGTGTAAAGGGTG
AATTCGAACAGCGTCTGAAAAATATCATCGACGCCGTACAGCACTTCCCGGTGCCGGTGCTGCTGTTTATTGATGAGGCA
CACACCATTATCGGGGCGGGTAATCAGGCAGGCGGGGCAGATGCGGCTAACCTGCTGAAACCAGCGCTGGCTCGCGGCGA
ACTGCGCACCATTGCGGCCACCACATGGAGTGAATACAAGCAGTATTTCGAACGTGACGCCGCCCTGGAGCGCCGCTTCC
AGATGGTCAAGGTTGATGAGCCCGATGATGATACGGCCTGCCTGATGCTGCGCGGTCTAAAATCCCGCTATGCCGAACAT
CATGGCGTACATATTACCGGCGAGGCCGTCCGGGCAGCGGTGACGCTATCCCGTCGTTACCTGACCGGACGCCAGTTGCC
AGATAAAGCCGTGGACCTGCTGGATACCGCAGCGGCCCGGGTGCGGATGAGTCTGGACACGCTGCCAGAACAGCTTACCC
GGTTGCAGGCTGAACTGACTGCGCTTGCCATGGAGCAGCAGGAGTTGCTGGAAGATATTTCTCTGGGTAACGCTGTTGAT
GCCAGCCGTCTGCCTCAGATCGAGCAACTTTCGCTGGAGCTCAATCAGCAGAAAGCTGCCCTTCAGTCACAATATGAGAC
CGAAAAGCAGCTCACCGACTCGCTGAAAGCCTGCCGTGAAGACATCAGCCGCCAGGAGGAGCTCTCCGCCCTTCAGCACG
AGCTTTCTCAGATTCAGAATAACAGTCCATTGCTGGGTCTGGATGTTGATGTCCGCACCGTTGCGACCGTTATCGCCGAC
TGGACAGGGGTTCCTCTCTCGTCGCTGATGAAGGATGAGCAGACCGAACTGCTGACGCTGGAAGAACAGCTGGCAACCCG
CGTAGTCGGTCAGGGTCCCGCCCTTAATGCCATTGCCGAGCGAATGAGGGCGTCAAAAACCGGCCTGACGCCGGAAAACG
GACAGCAGGGGGTGTTTTTACTGGTGGGTCCAAGCGGAGTGGGCAAAACAGAAACCGCGCTTGCGCTTGCTGACGTTATG
TATGGTGGTGAGAAATCGCTCATTACCATCAACCTGTCTGAATACCAGGAGCCACACACGGTCTCGCAGTTGAAAGGCTC
CCCTCCGGGCTATGTAGGATATGGTCAGGGCGGCATTCTCACCGAGGCAGTCCGTAAGCGGCCTTACAGCGTGGTGCTGC
TCGATGAAGTGGAGAAGGCCCATCGGGATGTAATGAATCTGTTTTATCAGGTCTTTGACCGGGGCTTTATGCGGGACGGA
GAAGGGCGTGAAATTGATTTTCGCAATACCGTGATCCTGATGACGTCCAACCTGGGAAGTGACCCGCTGATGCAGTTCCT
GGAAGAGCAACCAGAAGCCACTGAGAGCGATCTGCATGAGTTGTTACGCCCGATCCTGCGCGATCATTTCCAGCCAGCGC
TGCTGGCCCGCTTCCAGACGGTGATATACCGGCCGCTGGAAATGGATGCCATGCGCACCATCGTCGGCATAAAGCTCGCA
CAGGTGAGTACGCGTCTGCAACGCCACTACGGCATTTCCACGCACATTGGCGAAAGTCTTTTCGACACGCTGACGAAGGC
GTGTTTGCTGACGGATACCGGTGCCCGCAACGTGGACAGCCTGCTTAATCAGCAGATCCTGCCGGTTCTGAGCCAGCAGC
TATTAAGCCATATGGCGGCAAAACAAAAGCCATCCTCGCTACAGCTGACCTGGGATGATGAAGAGGGCATTGTGCTGGCG
TTTGATGCACAGGTAGAAGGAGAGCCGTCATGA