Detailed information of component protein


Summary

Component ID T6CP002378
Component protein type TssI
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (786 a.a.); Nucleotide sequence (2358 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SARI_RS12260
Coordinate (Strand) 2547387..2549744 (-)
NCBI ID WP_000093954.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.5e-61 42..355
DUF2345 PF10106.11 4.7e-43 610..755
T6SS_Vgr PF13296.8 5.4e-36 491..591
Phage_base_V PF04717.14 9.4e-11 405..471
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 786 a.a.    

>T6CP002378 NC_010067:c2549744-2547387 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssI]
MSSFLSNKATSLVHQLLGQSRYRVDVHECSHFLDVLRYSAVESLSQPWRYDVAVTCTSADIACDTLLLKPASFTFQTPVF
DGTPALPVRTVFGVVESFRRVSTSNDETHYALTIVPRIALLGYTKGSEIYLNQSVIEVVEQVLRKHGLEGPDFEFRLSRE
YPSRELITQWRETDLEFIQRLLAEVGIYWRYEMDSRLEQDVVIFQDSQQQYEFGVTLPLRNQAGMSDSGQESIWDIQTAY
NVVSGSVATRDYNYRDALTPQDSAESIFSKEGITTGETYHYAEPFLTAGDADSPETGAYFARLRHERILNAQYRVSGHSS
SPHLAPGQVLETDGTLPDAVKDGIVITTVRTSGSRKSSFTMTFEGIPYSETVCWRPALLNRPVISGSLPARVESTQKGDT
YSWLDPQGRYRVKLDLDRNSPEQGYAYLWLRLAKPYAGDTYGFHSPLIDGTEVAVVFDGGDPDRPYIAYALHDSEHPDHV
TSDNHTRNVWRTPANNKLRMEDKRQEEHIKLATEYGKTQLNMGHLVNSQREKRGAGFELRTDEHGAVRAAKGLFLTADAQ
AKAQGPVLEMAPAINQINQANSQMQALNSAAEAAGALVSDISTQVNLVRDRLKDLQSAVLLASAPQGVAFTSGEHLQLSS
ARNTMINAGQHLDIGAMKNLSVSVEKALGMFVHKGGAKVVANQGDIELQAQHNTMALFSEKQLTVTSSEDEIIISTPETL
TLNGGGSYLRLSKNGIEHGSEGIMVMKVASYLVPGTGASQQMETPDFKTTDVTVTRKNSAKWTSE*

  Nucleotide sequence: 2358 bp    

>T6CP002378 NC_010067:c2549744-2547387 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssI]
ATGAGCAGTTTCCTCTCCAACAAGGCTACCAGCCTGGTACATCAGCTTTTAGGGCAATCACGGTACCGGGTTGATGTGCA
TGAATGCAGCCATTTCCTGGATGTGTTGCGTTACAGTGCGGTGGAGTCCCTCAGCCAGCCCTGGCGGTATGACGTGGCGG
TGACCTGCACCTCTGCGGATATCGCCTGCGACACGTTACTGCTGAAGCCGGCGTCATTCACTTTCCAGACCCCCGTGTTT
GACGGAACACCGGCCCTGCCTGTAAGGACGGTATTCGGCGTGGTTGAGTCGTTTCGCCGCGTGTCTACCTCGAATGATGA
GACCCATTACGCGCTGACGATCGTTCCCCGTATTGCCCTTCTGGGCTATACGAAAGGGAGCGAGATCTACCTCAATCAGT
CGGTTATTGAGGTGGTTGAACAGGTATTGCGTAAACACGGGCTGGAAGGGCCTGATTTTGAGTTCCGGCTCTCCCGGGAA
TATCCCTCCCGGGAGCTCATTACCCAGTGGCGGGAAACTGACCTTGAGTTTATCCAGCGCCTGCTGGCGGAGGTGGGCAT
TTACTGGCGCTATGAAATGGACAGCCGTCTTGAACAGGACGTTGTGATTTTCCAGGACAGCCAGCAGCAGTATGAATTTG
GTGTCACGCTGCCATTACGCAACCAGGCCGGGATGAGTGACAGCGGGCAGGAGAGCATCTGGGATATTCAGACCGCATAT
AACGTGGTAAGCGGAAGTGTGGCCACCCGTGACTACAACTACCGTGATGCACTGACGCCTCAGGACAGCGCCGAAAGTAT
TTTCAGCAAAGAGGGGATCACGACCGGGGAAACGTATCATTACGCGGAACCCTTCCTGACGGCAGGTGACGCTGATAGCC
CGGAGACCGGGGCATACTTCGCCCGCCTGCGTCACGAACGCATTCTGAACGCGCAGTATCGCGTCAGCGGGCATTCCTCC
AGCCCTCATCTGGCGCCGGGGCAGGTACTGGAAACAGATGGCACGTTGCCGGATGCGGTGAAAGACGGAATTGTCATCAC
GACCGTACGTACCAGCGGTTCACGCAAAAGTAGCTTTACGATGACGTTTGAGGGTATCCCCTATAGCGAAACTGTCTGCT
GGCGCCCTGCGTTGCTTAATCGCCCGGTGATATCCGGATCGCTCCCGGCCCGGGTGGAAAGCACACAGAAAGGCGACACC
TATTCCTGGCTCGATCCGCAGGGCCGCTACCGTGTGAAACTGGACCTTGACCGCAACAGTCCTGAACAGGGTTATGCCTA
TTTGTGGTTGCGGCTGGCTAAGCCCTATGCCGGGGATACCTACGGATTCCACTCACCGCTTATCGACGGAACTGAAGTGG
CCGTAGTATTTGACGGCGGAGATCCGGATCGTCCCTACATCGCTTATGCCCTGCATGACTCAGAACATCCGGACCACGTC
ACCAGTGACAATCATACGCGGAATGTGTGGCGCACCCCGGCGAACAATAAGCTGCGGATGGAGGATAAGCGCCAGGAAGA
GCATATCAAGCTCGCGACGGAATACGGCAAAACGCAGCTGAACATGGGGCACCTGGTCAACAGCCAGCGTGAAAAACGCG
GCGCCGGTTTTGAACTGCGTACGGATGAGCATGGCGCAGTTCGTGCAGCAAAAGGCCTCTTCCTGACAGCAGATGCGCAG
GCCAAAGCGCAGGGGCCGGTGCTTGAAATGGCCCCAGCCATCAACCAGATTAACCAGGCCAACAGCCAGATGCAGGCGCT
GAACAGTGCCGCAGAAGCGGCCGGAGCGCTGGTATCCGATATCAGCACCCAAGTCAACCTGGTCAGGGACAGGCTGAAGG
ATCTTCAGTCGGCGGTACTGCTGGCGAGCGCCCCGCAGGGCGTGGCATTTACCTCAGGTGAACACCTTCAGCTCAGCAGC
GCCCGCAACACGATGATTAATGCAGGCCAGCACCTTGATATCGGAGCGATGAAGAATCTGTCCGTGAGCGTGGAAAAAGC
CCTGGGAATGTTTGTGCATAAAGGCGGGGCGAAGGTTGTCGCCAACCAGGGAGACATCGAGCTCCAGGCTCAGCACAATA
CCATGGCATTGTTTTCAGAAAAGCAGTTGACGGTGACCAGTAGCGAAGACGAAATTATTATCAGCACCCCGGAAACACTG
ACGCTTAACGGTGGTGGGTCATATCTGCGCCTGAGTAAGAACGGAATTGAACATGGATCTGAGGGGATAATGGTGATGAA
GGTTGCGAGCTACCTGGTGCCGGGCACAGGTGCCAGCCAGCAGATGGAAACACCGGACTTTAAAACGACGGACGTGACGG
TCACAAGAAAAAACTCTGCCAAATGGACGAGTGAATAA