Detailed information of component protein


Summary

Component ID T6CP002377
Component protein type TssM
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (1124 a.a.); Nucleotide sequence (3372 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SARI_RS12200
Coordinate (Strand) 2532006..2535377 (-)
NCBI ID WP_001151320.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 2e-67 420..730
IcmF_C PF06744.14 1.5e-20 988..1091
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1124 a.a.    

>T6CP002377 NC_010067:c2535377-2532006 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssM]
MAKVKVKTLIGSVVTVAFFLTVIVAFLFYAFPENVASATGFGPYDGQRILTFCTILVAALFLFGWLIEKAFDFAGRSGLY
FHWGQKKAQMVVPATGTIASEDDEEEPVFSEDAVSEHLRFRYGRRWQRKVRLLLVMGNPDDVQKAAPGLCHDLWQEGDGN
VLIYGGDAQSLPDEIFLSKLKRLRSGQPVDGIIQVMSTSALPTDSERDAFLRFRQKADHQLGWQAPVWLWLTDKAKGAQQ
DADTAATGVIFGPEGTIEEADKALTTLSQRLQKAGMAQILNNPAHNGLLQLSSRLQHELKARLTVLLSGLMQGSAAFRLR
GVMFSPELAATGTVPNTRLDTPVWKAVIDDCNAVSAKKLGYDWLKVLRLILLALIVLWGAGTQLSLIVNRTQIYQAQETA
RQAADTAKPLAERLHNQLVLQQAIARLQHREATGAPWYTRFGLNQDSDTLAALWPLYAKNNAQLMRDATADYLRQQLNAF
VQLPPASDARTQGTQHTYDVLKSYLMLARPDKADASWLAKNVLVAWPKRQNVPDGTWQEMAPKLLGFYAQNLPEHPEWKI
KSDAELISTVRQILLKQIGQRNAESGLYQDMLKRVASNWPDLTLADMTGDTDASTVFSTDEVVPGMFTRQAWEEQVQDAI
DEVVKTRRDEIDWVLTDKTHQPGSDISPEALKARLTERYFTDFGNAWLNMVNSIQWQEASSLSEAIAQLNLIGDIRQSPL
VALMNTLNYQGKTGQKGGLLADSIVDSAKKLIGQKKNARQFIEQTRGPEGPLDGVFGPLMGLMEGKEGTGANGNLSFQSW
LARVTQVRLKLQQVTSAPDPQAMSQMLAQTVFQGKAIDLTDTRDYGSLFAASLGQEWNGFGQSLFVQPLDLAWRQVLAPA
AGSLNARWQSTIVEQWNKAFAGRYPFKATGSDASLPLLAQFLRSDSGRITTFLKTNLGGILHQEGNRWVVDPSASQGMVV
SPDFLLAINQLAELSDIVFSQGDAGVHFELMARPSRDVARVQLTLDEQNLDYFNQMESWQSFTWPGNTYYPGVSLSWRSV
NSGMQLYANNQGNWGFIRLLDKALITPLDASRTQLVWITADGNPLKFVMRSELGDGPLALLKLQGFTLPGSIFNVAAGTE
GVE*

  Nucleotide sequence: 3372 bp    

>T6CP002377 NC_010067:c2535377-2532006 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssM]
ATGGCTAAGGTAAAAGTAAAAACACTCATCGGCTCCGTTGTGACTGTCGCCTTTTTTCTGACGGTCATCGTGGCATTTCT
GTTTTATGCCTTTCCGGAAAACGTGGCTTCGGCCACCGGATTCGGTCCGTATGACGGCCAGCGCATACTCACATTCTGCA
CCATACTGGTTGCCGCGTTGTTTTTATTCGGCTGGCTGATTGAGAAGGCCTTCGACTTCGCCGGTAGATCGGGGCTGTAT
TTCCACTGGGGTCAGAAAAAGGCTCAGATGGTCGTCCCGGCAACAGGCACCATTGCGAGCGAAGATGATGAAGAAGAGCC
TGTCTTCAGTGAGGATGCCGTATCCGAGCACCTCCGTTTCCGCTATGGCCGTCGCTGGCAGCGTAAAGTGCGACTCCTGC
TGGTGATGGGTAATCCGGACGACGTCCAGAAAGCAGCCCCGGGTCTGTGCCATGACCTCTGGCAGGAAGGTGACGGCAAC
GTACTGATTTATGGCGGTGATGCGCAGTCACTTCCGGATGAGATCTTCCTTTCAAAACTGAAACGCCTGCGATCAGGCCA
GCCGGTTGATGGAATTATTCAGGTGATGAGTACTTCAGCCCTCCCGACGGATAGCGAACGGGATGCTTTCTTGCGTTTCC
GCCAGAAAGCCGATCATCAGCTGGGCTGGCAGGCGCCTGTCTGGCTGTGGCTGACTGATAAAGCCAAAGGTGCTCAGCAG
GACGCGGACACGGCTGCGACAGGGGTGATATTCGGACCGGAAGGCACTATAGAAGAGGCGGATAAGGCATTGACTACGCT
GTCTCAGCGCCTGCAAAAAGCCGGTATGGCACAGATACTGAATAATCCGGCTCATAACGGCCTGCTCCAGTTATCTTCCC
GTCTGCAGCACGAACTGAAAGCCCGTCTGACCGTTTTGCTCAGCGGGCTGATGCAGGGATCTGCGGCCTTTCGTTTACGG
GGGGTTATGTTCAGTCCTGAACTGGCCGCTACCGGAACGGTGCCGAACACGCGCCTCGACACACCGGTGTGGAAAGCCGT
CATTGATGACTGTAATGCCGTCAGCGCAAAAAAACTGGGCTATGACTGGCTGAAAGTGCTACGGCTCATCCTGCTTGCTC
TGATTGTGTTATGGGGTGCAGGTACTCAGCTGTCACTCATCGTTAACCGTACCCAGATTTATCAGGCACAGGAAACGGCG
AGGCAGGCAGCGGATACCGCAAAACCACTTGCTGAACGCCTGCACAACCAGCTCGTACTCCAGCAAGCTATTGCCCGTCT
GCAACATCGTGAGGCGACCGGCGCCCCATGGTACACGCGTTTTGGTCTTAATCAGGACAGTGACACGCTGGCTGCTCTCT
GGCCGCTGTATGCGAAAAACAACGCACAGCTGATGAGGGATGCCACCGCAGATTATCTCAGGCAGCAGCTGAATGCGTTT
GTGCAACTCCCTCCTGCCAGTGATGCCCGTACGCAGGGTACACAGCACACCTATGACGTGCTCAAAAGTTATCTGATGCT
GGCCCGTCCGGATAAAGCGGACGCGAGCTGGCTGGCAAAAAACGTACTGGTAGCCTGGCCGAAGCGTCAGAATGTGCCGG
ATGGCACATGGCAGGAAATGGCGCCGAAACTACTGGGTTTTTATGCGCAGAACCTCCCGGAACATCCGGAATGGAAAATT
AAGTCCGATGCTGAACTCATCAGTACGGTACGTCAGATCCTGCTCAAACAGATAGGCCAGCGTAACGCCGAATCCGGGTT
GTACCAGGACATGCTTAAGCGCGTTGCCAGTAACTGGCCTGATTTAACGCTGGCGGACATGACCGGTGATACCGATGCCT
CAACGGTATTCAGCACTGACGAAGTCGTTCCGGGAATGTTTACACGCCAAGCCTGGGAAGAGCAGGTTCAGGATGCAATT
GATGAGGTGGTCAAAACCCGGCGTGACGAAATCGACTGGGTTCTGACGGATAAAACCCATCAGCCCGGGAGTGATATTTC
CCCGGAAGCGCTGAAGGCCCGTCTGACAGAACGCTATTTTACCGATTTTGGTAACGCCTGGCTGAACATGGTCAACAGCA
TTCAGTGGCAGGAAGCTTCGTCACTTTCTGAGGCGATTGCCCAGCTTAATCTGATCGGTGATATCCGCCAGTCGCCTCTG
GTTGCACTAATGAACACGCTAAACTACCAGGGAAAAACCGGACAGAAGGGCGGGCTACTTGCCGACTCGATAGTGGATTC
AGCGAAAAAGCTGATCGGTCAGAAAAAAAATGCCAGACAGTTTATAGAGCAGACCCGGGGGCCTGAAGGCCCGCTTGATG
GGGTGTTTGGTCCGCTAATGGGGCTGATGGAAGGGAAAGAGGGTACAGGTGCTAACGGTAACCTTAGCTTCCAGTCCTGG
CTTGCCCGCGTTACCCAGGTGCGGCTGAAGCTTCAGCAGGTCACCAGCGCACCGGATCCGCAGGCTATGTCGCAGATGCT
GGCCCAGACCGTGTTCCAGGGCAAAGCCATCGACTTGACCGACACCCGCGATTACGGCAGTCTGTTTGCGGCAAGCCTGG
GCCAGGAATGGAACGGATTTGGACAGTCATTGTTCGTACAACCGTTAGATCTGGCGTGGAGACAGGTTCTGGCTCCGGCA
GCGGGAAGCCTGAATGCACGCTGGCAGTCGACCATTGTCGAGCAGTGGAATAAGGCCTTTGCGGGACGGTACCCGTTTAA
AGCCACCGGTAGCGATGCTTCCCTGCCGCTACTGGCTCAGTTCCTGCGTAGCGACTCGGGTCGAATCACTACCTTCCTGA
AAACGAATCTCGGCGGGATCCTCCACCAGGAAGGGAATCGCTGGGTCGTTGATCCTTCCGCAAGTCAGGGGATGGTTGTC
AGTCCGGATTTTCTCCTGGCGATTAATCAGCTGGCGGAACTCTCAGATATCGTGTTCTCTCAGGGCGATGCAGGTGTTCA
CTTCGAGTTGATGGCGCGTCCTTCACGGGATGTTGCCAGAGTGCAGCTTACCCTCGATGAGCAGAACCTGGATTACTTCA
ATCAGATGGAAAGCTGGCAGAGCTTCACCTGGCCGGGGAATACGTACTATCCGGGCGTGTCACTCAGCTGGCGAAGTGTC
AACAGCGGTATGCAGCTCTATGCAAACAACCAGGGTAACTGGGGTTTCATTCGCCTGCTGGACAAAGCCCTGATCACTCC
ACTCGATGCCAGCCGTACACAGCTGGTGTGGATCACCGCCGATGGCAATCCTCTGAAGTTTGTGATGCGCAGCGAGCTCG
GCGACGGTCCGCTTGCCTTACTGAAGCTACAGGGATTTACGCTACCAGGGTCCATTTTTAACGTTGCCGCTGGCACCGAA
GGCGTTGAGTAA