Detailed information of component protein


Summary

Component ID T6CP002376
Component protein type TssF
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (590 a.a.); Nucleotide sequence (1770 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SARI_RS12175
Coordinate (Strand) 2525360..2527129 (-)
NCBI ID WP_000342473.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.2e-182 1..583
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 590 a.a.    

>T6CP002376 NC_010067:c2527129-2525360 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssF]
MDDLTLRYYEAEMRYLREAGKEFARAHPDRAAMLNLDKPGARDPYVERLFEGFAFLMGRLREKLDDDLPELTEGLVSLLW
PHYMRTIPSLAIVEFSPDWHSLRQAEMLAEGFSVLSRPVGPQKTACQYRTTRDVPLQPLHLADARLHTETDGRSAIRLRF
ECPEKVDWSKAGIDKVAIFLNAESPVSSALHLAMTRRVHAMFARHAGTHTERHQFDGWCKPMGFDDNDGLWKKADTAFSG
YQLLLEYFSFRPKFMFVELRGLDAIGLTAASTWFEIDIVLSEAWSSDLPFETENFRLHCAPVINLFTLEADPLTLDPLEN
EYLLRPLRLQDGHTEIYSVDNIHGAVKNGKHPYVPFTSFRHRGGMMRHDAPERYFHTRVKRGPSGLYDTWLILGGRSFEL
EQLSEKPESLSMRITGTNGQLPRKALESTLLDRVVKAGKVPVRVLNVTAPTMPLYPPANDRFHWRVMSHLGSNFLSMMDN
PEVLRGTLALYDWTDDEMNRRRLEAIVAVKHTLIRRFEKGFMLRGVDIEVTLNTDNFAGEGDVNLFGEMLHRFFALYADI
HLFNQLTLVLQPTGKRLRWRENYSQHVPG*

  Nucleotide sequence: 1770 bp    

>T6CP002376 NC_010067:c2527129-2525360 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssF]
ATGGATGATTTAACCCTGCGCTATTACGAAGCCGAAATGCGCTACCTGCGCGAAGCAGGTAAAGAGTTTGCCCGGGCCCA
CCCGGACCGGGCGGCAATGCTTAATCTGGATAAACCCGGCGCTCGCGATCCCTACGTAGAGCGCCTGTTCGAAGGTTTTG
CCTTTCTGATGGGCCGTCTGCGTGAAAAGCTTGATGACGATCTGCCGGAACTGACCGAAGGGCTGGTGAGCCTGCTGTGG
CCGCACTATATGCGGACCATCCCGTCGCTGGCCATCGTCGAGTTCTCCCCTGACTGGCATAGTCTGCGTCAGGCCGAAAT
GCTGGCTGAAGGCTTCTCCGTGCTGTCGCGTCCTGTCGGGCCGCAAAAAACCGCCTGTCAGTACCGGACGACTCGCGATG
TGCCGCTACAACCGCTGCATCTTGCGGACGCCCGCCTGCACACGGAAACCGATGGTCGCTCTGCTATTCGCCTGCGCTTC
GAATGCCCTGAAAAAGTGGACTGGAGTAAAGCCGGGATCGACAAAGTCGCCATATTCCTTAACGCAGAGAGTCCGGTCAG
TTCAGCGCTGCATCTGGCAATGACCCGTCGTGTTCACGCGATGTTTGCCCGTCATGCCGGGACGCACACAGAACGTCATC
AGTTTGACGGCTGGTGCAAACCGATGGGCTTTGATGATAATGACGGCCTGTGGAAGAAGGCGGATACGGCCTTCAGCGGT
TACCAGCTGCTGCTGGAATATTTCAGTTTCCGTCCAAAGTTTATGTTCGTTGAACTGCGTGGCCTCGACGCCATCGGGCT
CACTGCGGCCAGCACCTGGTTTGAAATCGATATTGTGCTCAGTGAAGCCTGGTCATCCGATCTGCCTTTTGAGACGGAGA
ACTTCCGGCTGCACTGTGCGCCGGTCATTAATCTCTTTACGCTGGAAGCCGACCCTCTGACGCTCGACCCGCTGGAAAAT
GAATACCTGCTCAGGCCGCTGCGTCTTCAGGATGGTCACACCGAGATTTACAGCGTCGATAACATTCATGGCGCAGTGAA
GAATGGCAAACATCCTTATGTACCTTTCACCAGCTTTCGCCACCGGGGTGGCATGATGCGCCACGATGCACCTGAGCGTT
ACTTCCACACTCGCGTGAAACGTGGCCCTTCAGGACTCTATGACACCTGGCTCATTCTCGGGGGACGCTCGTTCGAGCTG
GAGCAACTGTCAGAAAAACCTGAATCCCTTTCGATGCGGATAACCGGTACCAACGGGCAGCTTCCGCGCAAGGCGCTGGA
AAGTACATTGCTGGACAGAGTGGTCAAGGCAGGTAAAGTTCCCGTCAGGGTACTGAACGTCACAGCACCAACGATGCCGC
TGTATCCCCCGGCTAACGACCGTTTTCACTGGCGGGTAATGAGTCACCTCGGATCAAACTTCCTCAGCATGATGGACAAT
CCGGAGGTTCTGCGGGGAACGCTGGCGCTCTATGACTGGACCGACGATGAAATGAACCGCCGTCGGCTTGAAGCCATCGT
TGCCGTGAAGCACACCCTGATCCGCCGTTTTGAGAAGGGCTTTATGCTCAGGGGCGTGGACATTGAGGTCACGCTGAATA
CGGATAATTTTGCAGGCGAGGGGGATGTGAATCTGTTCGGCGAGATGCTGCACCGGTTCTTCGCGCTCTATGCGGATATT
CACCTCTTTAATCAGCTCACGCTGGTACTGCAACCGACAGGGAAACGACTGAGATGGCGCGAGAATTACAGCCAGCACGT
ACCAGGCTGA