Detailed information of component protein


Summary

Component ID T6CP002375
Component protein type TssG
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (361 a.a.); Nucleotide sequence (1083 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SARI_RS12170
Coordinate (Strand) 2524314..2525396 (-)
NCBI ID WP_000090424.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 8.3e-72 20..321
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 361 a.a.    

>T6CP002375 NC_010067:c2525396-2524314 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssG]
MARELQPARTRLTLTLNKDIWRANFYRFCQLLEQENPDAPKLGTTSHPGDDPVRFRPWPGMGFPVSTLKAVETDEDHPTL
PPTVRTTFLGMYGVDSPLPTSWLDDIAQRREGHEAVTSFLDIFSHRITTQYYRIWRKYAYPATFEAGGRDATSQCLLGLV
GLGIPGTAEQVATPVSRFLALLGTMRLPTRNAEGIRALVSLLAPNTRAIITEPDPVKVHIDNRSGLGAGNWIRLSQRATL
GKTAKEACSRVLVTLETEDPGEAEGWLPGGLLHTDLLVLLRVYLGYRSDARLRLTVPVRLLPEPRLGKGRRIQLGRTGLL
GLKAGKLSNNRESLTVSLGCYEGLQCSALPPAEDGHYRFN*

  Nucleotide sequence: 1083 bp    

>T6CP002375 NC_010067:c2525396-2524314 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssG]
ATGGCGCGAGAATTACAGCCAGCACGTACCAGGCTGACGTTAACACTCAATAAAGATATCTGGCGGGCCAATTTCTACCG
TTTCTGCCAGTTGCTGGAGCAGGAAAATCCGGACGCGCCAAAGCTGGGAACCACCAGCCATCCGGGCGACGACCCGGTAA
GATTCAGACCGTGGCCTGGTATGGGGTTCCCGGTCAGTACCCTGAAAGCGGTGGAGACCGACGAAGACCATCCGACATTG
CCCCCAACGGTCCGCACGACATTTCTGGGGATGTATGGCGTGGACTCGCCTCTGCCGACGTCCTGGCTGGACGATATTGC
TCAGCGCCGCGAAGGGCACGAGGCGGTCACCTCGTTTCTGGATATTTTCAGCCACCGCATCACCACCCAGTACTATCGGA
TCTGGCGAAAATACGCCTATCCGGCCACCTTCGAGGCAGGTGGCCGCGATGCCACATCACAGTGTCTGCTCGGTCTGGTG
GGGCTCGGTATACCGGGTACGGCTGAGCAGGTGGCAACGCCGGTTTCCCGCTTTCTGGCCCTGCTGGGCACCATGCGATT
ACCGACCCGCAATGCGGAAGGCATTCGGGCTCTGGTGAGCCTGCTTGCACCGAATACCCGGGCAATTATCACCGAACCCG
ATCCGGTGAAGGTCCATATCGATAACCGCAGCGGGCTGGGTGCCGGAAACTGGATCCGTCTTTCGCAGCGAGCCACGCTG
GGCAAAACCGCAAAAGAAGCATGCAGTCGGGTACTGGTGACCCTGGAAACGGAAGATCCAGGTGAGGCAGAAGGCTGGTT
ACCCGGCGGTTTACTCCATACCGATTTGCTGGTCCTGCTACGCGTTTATCTCGGCTACCGCAGTGACGCCCGACTACGCC
TCACCGTACCCGTACGATTGCTGCCTGAGCCTCGACTTGGCAAAGGCAGGCGCATTCAACTGGGCCGCACCGGTTTGCTG
GGTCTGAAAGCAGGCAAACTCAGCAATAACCGGGAGAGTCTCACCGTCAGTCTGGGCTGCTATGAAGGGCTGCAATGTTC
TGCGTTACCGCCCGCTGAAGACGGGCATTACCGCTTCAACTAA