Detailed information of component protein
Summary
| Component ID | T6CP002374 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00237  (Type i2) |
| Strain | Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980 |
| Replicon | chromosome |
| Sequence | Protein sequence (175 a.a.); Nucleotide sequence (525 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SARI_RS12165 |
| Coordinate (Strand) | 2523754..2524278 (-) |
| NCBI ID | WP_000246898.1 |
| RefSeq | NC_010067 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 1.1e-30 | 44..164 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 175 a.a.
>T6CP002374 NC_010067:c2524278-2523754 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssJ]
MATVTRRWALTLIACSLLAGCGLTQTVTDGTVSITKSIFYKKIKTLHLDFTPRTAINADGAQTPLATMMRVYQLRDRKAV
DAADYQTLLRNADTVLNDDVLASKSLLVMPKGSVTLNMPMDEDAQFVAVVGLFNRPDQKDNRWRLVLTRDDLDPDKPRTI
ELGDGWLSLVPVKE*
MATVTRRWALTLIACSLLAGCGLTQTVTDGTVSITKSIFYKKIKTLHLDFTPRTAINADGAQTPLATMMRVYQLRDRKAV
DAADYQTLLRNADTVLNDDVLASKSLLVMPKGSVTLNMPMDEDAQFVAVVGLFNRPDQKDNRWRLVLTRDDLDPDKPRTI
ELGDGWLSLVPVKE*
Nucleotide sequence: 525 bp
>T6CP002374 NC_010067:c2524278-2523754 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssJ]
ATGGCAACAGTAACCCGCCGGTGGGCGCTGACGCTTATTGCCTGTAGCCTGCTCGCAGGCTGCGGTCTGACGCAGACCGT
CACGGACGGTACGGTCAGCATCACGAAATCCATCTTCTACAAGAAAATCAAAACGCTGCATCTGGATTTTACCCCGCGTA
CGGCCATTAACGCCGATGGCGCACAGACACCGCTGGCGACGATGATGAGAGTCTATCAGCTCAGAGATCGTAAAGCGGTT
GATGCCGCCGATTACCAGACACTGCTGCGTAATGCCGATACGGTACTTAACGACGATGTGCTGGCGTCAAAATCGCTGCT
GGTGATGCCTAAAGGCAGCGTGACACTCAATATGCCTATGGATGAAGACGCTCAGTTCGTGGCTGTGGTGGGACTGTTTA
ACCGCCCGGATCAGAAGGACAACCGCTGGCGGCTGGTACTGACCCGTGACGATCTCGACCCGGACAAACCCCGCACGATT
GAACTGGGTGATGGCTGGCTCAGCCTCGTGCCGGTGAAGGAGTGA
ATGGCAACAGTAACCCGCCGGTGGGCGCTGACGCTTATTGCCTGTAGCCTGCTCGCAGGCTGCGGTCTGACGCAGACCGT
CACGGACGGTACGGTCAGCATCACGAAATCCATCTTCTACAAGAAAATCAAAACGCTGCATCTGGATTTTACCCCGCGTA
CGGCCATTAACGCCGATGGCGCACAGACACCGCTGGCGACGATGATGAGAGTCTATCAGCTCAGAGATCGTAAAGCGGTT
GATGCCGCCGATTACCAGACACTGCTGCGTAATGCCGATACGGTACTTAACGACGATGTGCTGGCGTCAAAATCGCTGCT
GGTGATGCCTAAAGGCAGCGTGACACTCAATATGCCTATGGATGAAGACGCTCAGTTCGTGGCTGTGGTGGGACTGTTTA
ACCGCCCGGATCAGAAGGACAACCGCTGGCGGCTGGTACTGACCCGTGACGATCTCGACCCGGACAAACCCCGCACGATT
GAACTGGGTGATGGCTGGCTCAGCCTCGTGCCGGTGAAGGAGTGA