Detailed information of component protein


Summary

Component ID T6CP002374
Component protein type TssJ
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (175 a.a.); Nucleotide sequence (525 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) SARI_RS12165
Coordinate (Strand) 2523754..2524278 (-)
NCBI ID WP_000246898.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 1.1e-30 44..164

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 175 a.a.    

>T6CP002374 NC_010067:c2524278-2523754 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssJ]
MATVTRRWALTLIACSLLAGCGLTQTVTDGTVSITKSIFYKKIKTLHLDFTPRTAINADGAQTPLATMMRVYQLRDRKAV
DAADYQTLLRNADTVLNDDVLASKSLLVMPKGSVTLNMPMDEDAQFVAVVGLFNRPDQKDNRWRLVLTRDDLDPDKPRTI
ELGDGWLSLVPVKE*

  Nucleotide sequence: 525 bp    

>T6CP002374 NC_010067:c2524278-2523754 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssJ]
ATGGCAACAGTAACCCGCCGGTGGGCGCTGACGCTTATTGCCTGTAGCCTGCTCGCAGGCTGCGGTCTGACGCAGACCGT
CACGGACGGTACGGTCAGCATCACGAAATCCATCTTCTACAAGAAAATCAAAACGCTGCATCTGGATTTTACCCCGCGTA
CGGCCATTAACGCCGATGGCGCACAGACACCGCTGGCGACGATGATGAGAGTCTATCAGCTCAGAGATCGTAAAGCGGTT
GATGCCGCCGATTACCAGACACTGCTGCGTAATGCCGATACGGTACTTAACGACGATGTGCTGGCGTCAAAATCGCTGCT
GGTGATGCCTAAAGGCAGCGTGACACTCAATATGCCTATGGATGAAGACGCTCAGTTCGTGGCTGTGGTGGGACTGTTTA
ACCGCCCGGATCAGAAGGACAACCGCTGGCGGCTGGTACTGACCCGTGACGATCTCGACCCGGACAAACCCCGCACGATT
GAACTGGGTGATGGCTGGCTCAGCCTCGTGCCGGTGAAGGAGTGA