Detailed information of component protein
Summary
| Component ID | T6CP002373 |
| Component protein type | TssI |
| T6SS ID (Type) | T6SS00237  (Type i2) |
| Strain | Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980 |
| Replicon | chromosome |
| Sequence | Protein sequence (1197 a.a.); Nucleotide sequence (3591 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SARI_RS23890 |
| Coordinate (Strand) | 2520159..2523749 (-) |
| NCBI ID | WP_000371003.1 |
| RefSeq | NC_010067 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Phage_GPD | PF05954.13 | 2.7e-57 | 33..339 |
| Pyocin_S | PF06958.14 | 1e-37 | 912..1053 |
| DUF2345 | PF10106.11 | 4.6e-34 | 603..727 |
| T6SS_Vgr | PF13296.8 | 1.7e-32 | 476..575 |
| Phage_base_V | PF04717.14 | 5.7e-08 | 390..456 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 1197 a.a.
>T6CP002373 NC_010067:c2523749-2520159 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssI]
MDNWLALFDGQTRYFLDINDSSVKPDVLRFYGREALSEPFRWDIEFTTLQANIPPEQVLMKYASFRMRSGKSVHGMVTRL
EWLSTSKDQSHYRLTLSSRLALLGYTRQCAVYQNQSVPEVVEQVLRKHGLEGPDFEFRLEHTYPPREIITQWQETDLQFI
QRILSEVGIYWRTMMDDVRDLDTYIFADSQLNYQFDVRLPYSEPSGLFDGAAESVWDVRTWHNIATGTVVTRDYNYRTAT
TPMDAAVSVRSDAVTTGEHYRYAAPYREAGDDASPEPETESGAFYARLHHERELNRSARIHLFSNAAHLTPGQVLEPQGD
VITALQEGVFLTLVTFRGARDSRLHVSVWGQPYTERYCFRPVEIPRPVIPGTLPARIESREKNDTYAHLDEQGRYRVKLD
FDREGTESGYGYLWLRMAKPYAGDTLGWHTPLTDGTEVAIAYSNGDIDLPYIAYALHDSEHPDHVNRDNHTRNVLRTPAN
NKLRMEDRRGEEHIKLATEYGKTQLNSGHLVNSKGETRGRGAELRTDEWGTLRAGKGLFVSADAQAKAQGEVLDMSAALE
EIDRLNQQLQQMEIAAEQAQALKADVDSQIRMFEQRLKPLSEALLMSAPEGMALTSGEHMQMTATKNVAINAGGDASIGA
MGNMTALAGDKLGLFARTGQLSMKASEGPVEMQAQNAAMRLFAEKKLTMSSASDISFAGKKRITLVGGGSYLRLEAGKVE
YGTTASYLRKVKRTMAASASAKPVQAVSLPPPATMREFNPETLAPWVTPVYAKSCLKEKGCTDAGTAEEPVDNFGQMTIF
AQPVEDDCCGYGHQHEHADDEVVQHAQSAKKRKPDAGGENAPAQATAAPLALGAATGLMTQVWGEWSLTGALGAARGIPY
VGAMMSALYVPSAGEGSDRVPGRDEFWYEEELRQKSLTGAKATTRVRFFWRQDEQGNMRVYGVHTGEGTPYEGVRTAEMK
WVEKNSRYEFKPAHGADVPLITWTPERPEGGDLPAHTGSDIKPIDQATILVTPIPDGKDEYTTPPFPMPEERDLNDYILV
FPAGSGIKPVYVYLKDDSRNQPGTATGNGVKLSGDKPWLDLSVTNKGNGAPIPSHIADKLRGRSYGSFDDLREDLWEEIS
NDPKLMAQFGEDNQERISNGLAPWVPSDGYYHGPNEVVKKFQIHHDQAIEDGGGVYDLDNLRIVTPRLHDEIHYRR*
MDNWLALFDGQTRYFLDINDSSVKPDVLRFYGREALSEPFRWDIEFTTLQANIPPEQVLMKYASFRMRSGKSVHGMVTRL
EWLSTSKDQSHYRLTLSSRLALLGYTRQCAVYQNQSVPEVVEQVLRKHGLEGPDFEFRLEHTYPPREIITQWQETDLQFI
QRILSEVGIYWRTMMDDVRDLDTYIFADSQLNYQFDVRLPYSEPSGLFDGAAESVWDVRTWHNIATGTVVTRDYNYRTAT
TPMDAAVSVRSDAVTTGEHYRYAAPYREAGDDASPEPETESGAFYARLHHERELNRSARIHLFSNAAHLTPGQVLEPQGD
VITALQEGVFLTLVTFRGARDSRLHVSVWGQPYTERYCFRPVEIPRPVIPGTLPARIESREKNDTYAHLDEQGRYRVKLD
FDREGTESGYGYLWLRMAKPYAGDTLGWHTPLTDGTEVAIAYSNGDIDLPYIAYALHDSEHPDHVNRDNHTRNVLRTPAN
NKLRMEDRRGEEHIKLATEYGKTQLNSGHLVNSKGETRGRGAELRTDEWGTLRAGKGLFVSADAQAKAQGEVLDMSAALE
EIDRLNQQLQQMEIAAEQAQALKADVDSQIRMFEQRLKPLSEALLMSAPEGMALTSGEHMQMTATKNVAINAGGDASIGA
MGNMTALAGDKLGLFARTGQLSMKASEGPVEMQAQNAAMRLFAEKKLTMSSASDISFAGKKRITLVGGGSYLRLEAGKVE
YGTTASYLRKVKRTMAASASAKPVQAVSLPPPATMREFNPETLAPWVTPVYAKSCLKEKGCTDAGTAEEPVDNFGQMTIF
AQPVEDDCCGYGHQHEHADDEVVQHAQSAKKRKPDAGGENAPAQATAAPLALGAATGLMTQVWGEWSLTGALGAARGIPY
VGAMMSALYVPSAGEGSDRVPGRDEFWYEEELRQKSLTGAKATTRVRFFWRQDEQGNMRVYGVHTGEGTPYEGVRTAEMK
WVEKNSRYEFKPAHGADVPLITWTPERPEGGDLPAHTGSDIKPIDQATILVTPIPDGKDEYTTPPFPMPEERDLNDYILV
FPAGSGIKPVYVYLKDDSRNQPGTATGNGVKLSGDKPWLDLSVTNKGNGAPIPSHIADKLRGRSYGSFDDLREDLWEEIS
NDPKLMAQFGEDNQERISNGLAPWVPSDGYYHGPNEVVKKFQIHHDQAIEDGGGVYDLDNLRIVTPRLHDEIHYRR*
Nucleotide sequence: 3591 bp
>T6CP002373 NC_010067:c2523749-2520159 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssI]
ATGGATAACTGGTTAGCGCTTTTTGACGGACAGACCCGATATTTTCTGGATATCAATGACAGTTCAGTGAAGCCGGATGT
TCTGCGCTTTTACGGCAGGGAAGCACTGAGCGAACCATTCCGCTGGGACATCGAGTTCACCACGCTTCAGGCGAATATCC
CCCCGGAACAGGTGCTGATGAAATATGCCTCCTTCCGGATGCGGAGCGGCAAAAGTGTGCACGGCATGGTGACCCGCCTG
GAATGGCTTTCCACCTCAAAGGACCAGTCTCACTACCGTCTTACGCTCAGTTCGCGCCTGGCACTCCTGGGATACACCCG
ACAGTGCGCGGTATATCAGAACCAGTCCGTTCCTGAGGTGGTTGAGCAGGTGCTGCGTAAACACGGTCTGGAAGGTCCAG
ATTTTGAATTCAGACTGGAGCATACGTACCCGCCGCGTGAAATTATCACTCAGTGGCAGGAGACGGATCTGCAATTCATC
CAGCGTATTTTGTCTGAGGTGGGAATTTACTGGCGCACGATGATGGACGATGTGCGCGATCTGGATACGTACATTTTTGC
CGACAGCCAGCTTAACTACCAGTTTGATGTGCGCCTGCCGTACAGCGAGCCATCGGGTCTGTTCGACGGCGCGGCAGAAT
CGGTCTGGGATGTGCGGACCTGGCACAACATAGCCACCGGCACTGTCGTCACGCGGGATTACAACTACCGGACCGCCACC
ACGCCGATGGATGCGGCGGTGAGTGTGCGCAGTGATGCGGTCACCACCGGGGAGCATTACCGCTACGCGGCACCTTATCG
TGAAGCGGGCGATGACGCCAGCCCGGAGCCGGAAACCGAATCTGGCGCGTTCTACGCCCGACTTCACCACGAGCGGGAGC
TCAACAGGTCGGCCCGCATTCACCTGTTCAGCAATGCTGCACACCTCACTCCCGGGCAGGTGCTGGAGCCGCAGGGCGAC
GTCATTACGGCCCTGCAAGAAGGCGTGTTCCTCACGCTGGTGACCTTCCGTGGCGCCCGTGATTCCCGTCTGCATGTGTC
AGTCTGGGGCCAGCCTTACACCGAACGTTACTGCTTCCGTCCGGTAGAGATCCCTCGCCCGGTCATCCCGGGTACGCTTC
CGGCCCGGATCGAAAGTCGCGAAAAAAATGATACCTACGCCCACCTGGACGAGCAGGGGCGCTATCGGGTGAAACTGGAC
TTCGACCGGGAGGGGACGGAATCCGGTTACGGTTACCTGTGGCTGCGGATGGCGAAGCCGTACGCCGGTGACACGCTGGG
CTGGCATACGCCGCTCACCGACGGAACCGAAGTGGCGATTGCGTACAGCAACGGTGATATTGACCTGCCGTACATCGCGT
ATGCGCTTCACGACTCAGAACATCCGGACCATGTGAACCGGGACAACCACACCCGCAACGTGCTGCGCACCCCGGCGAAT
AACAAGCTGCGGATGGAAGACAGGCGCGGGGAAGAGCACATCAAACTCGCCACGGAGTACGGCAAGACGCAGCTCAACAG
CGGGCACCTGGTGAACAGCAAGGGAGAGACTCGCGGCAGAGGCGCAGAGCTGCGCACCGACGAGTGGGGAACACTGCGAG
CCGGAAAGGGGCTGTTTGTCAGCGCCGACGCGCAGGCGAAGGCACAGGGCGAGGTGCTGGATATGAGCGCCGCGCTGGAG
GAAATCGACAGGCTCAACCAGCAGTTGCAGCAGATGGAAATCGCGGCAGAGCAGGCGCAGGCGCTGAAGGCGGATGTGGA
CAGCCAGATACGGATGTTTGAGCAGCGGCTGAAGCCGCTCAGTGAGGCGCTGCTGATGTCCGCCCCGGAAGGGATGGCGC
TGACCAGCGGGGAGCATATGCAGATGACGGCCACGAAAAACGTCGCGATAAATGCGGGCGGCGACGCAAGTATCGGTGCG
ATGGGCAATATGACAGCGCTGGCCGGAGATAAACTGGGGCTCTTTGCCCGTACGGGCCAGCTGAGCATGAAGGCCAGCGA
AGGTCCGGTGGAAATGCAGGCGCAGAATGCGGCTATGCGGCTGTTTGCGGAGAAGAAGCTGACGATGAGCTCAGCGAGTG
ACATCTCGTTTGCCGGGAAGAAACGCATCACGCTGGTCGGTGGCGGGAGTTATCTGCGGCTGGAGGCGGGAAAGGTCGAG
TATGGTACGACGGCGTCTTATTTACGCAAAGTGAAGCGGACGATGGCTGCATCAGCCAGTGCTAAACCTGTGCAAGCCGT
ATCCTTGCCGCCTCCGGCGACCATGCGAGAATTCAATCCCGAAACGCTCGCCCCCTGGGTGACGCCGGTGTATGCAAAAT
CCTGCCTGAAGGAGAAAGGCTGCACGGATGCCGGAACTGCCGAAGAGCCCGTTGATAATTTTGGACAGATGACAATTTTT
GCCCAGCCTGTTGAGGACGACTGCTGCGGTTACGGTCATCAGCATGAGCATGCAGATGATGAAGTCGTTCAGCATGCACA
GTCAGCCAAAAAACGTAAGCCTGACGCCGGGGGCGAAAATGCTCCAGCTCAGGCAACGGCTGCCCCGCTTGCTCTGGGAG
CTGCTACTGGCTTGATGACCCAGGTCTGGGGGGAATGGTCCCTGACCGGCGCATTGGGCGCGGCCCGGGGAATTCCGTAT
GTAGGCGCGATGATGTCCGCGCTCTACGTTCCTTCTGCGGGTGAGGGGAGTGACAGGGTTCCTGGGCGAGACGAGTTCTG
GTACGAGGAGGAACTGCGGCAGAAATCCCTCACCGGAGCAAAAGCGACAACCCGGGTGAGATTCTTCTGGCGACAGGATG
AGCAGGGCAACATGCGGGTCTACGGCGTTCATACGGGGGAAGGCACCCCGTATGAAGGTGTGCGCACGGCTGAAATGAAG
TGGGTTGAAAAAAATAGCCGCTATGAGTTCAAACCAGCTCACGGAGCTGATGTTCCTCTGATTACCTGGACGCCCGAACG
ACCGGAGGGCGGCGATTTACCCGCTCATACAGGAAGCGACATAAAACCCATCGACCAGGCTACGATACTCGTCACGCCAA
TACCAGACGGAAAAGATGAATACACGACGCCGCCATTCCCGATGCCGGAAGAGCGGGATCTTAACGATTACATTCTGGTG
TTCCCTGCCGGTTCCGGGATTAAGCCGGTTTATGTTTATCTGAAAGATGATTCACGAAATCAACCCGGAACAGCTACTGG
CAACGGTGTAAAACTATCCGGAGATAAACCCTGGCTAGATTTATCCGTAACAAACAAGGGAAATGGAGCCCCAATTCCAA
GTCATATTGCTGATAAGTTAAGAGGTAGAAGTTATGGATCTTTTGACGATCTAAGAGAAGATTTATGGGAAGAGATAAGT
AATGACCCAAAACTTATGGCTCAGTTTGGTGAAGATAACCAAGAACGTATTAGTAATGGGCTAGCACCTTGGGTTCCATC
AGATGGATACTATCATGGGCCAAATGAGGTTGTTAAAAAATTTCAGATACATCATGATCAAGCGATTGAAGATGGCGGTG
GTGTTTATGATTTAGATAATCTAAGAATCGTCACCCCTCGGTTACATGATGAGATTCACTATAGGAGGTAA
ATGGATAACTGGTTAGCGCTTTTTGACGGACAGACCCGATATTTTCTGGATATCAATGACAGTTCAGTGAAGCCGGATGT
TCTGCGCTTTTACGGCAGGGAAGCACTGAGCGAACCATTCCGCTGGGACATCGAGTTCACCACGCTTCAGGCGAATATCC
CCCCGGAACAGGTGCTGATGAAATATGCCTCCTTCCGGATGCGGAGCGGCAAAAGTGTGCACGGCATGGTGACCCGCCTG
GAATGGCTTTCCACCTCAAAGGACCAGTCTCACTACCGTCTTACGCTCAGTTCGCGCCTGGCACTCCTGGGATACACCCG
ACAGTGCGCGGTATATCAGAACCAGTCCGTTCCTGAGGTGGTTGAGCAGGTGCTGCGTAAACACGGTCTGGAAGGTCCAG
ATTTTGAATTCAGACTGGAGCATACGTACCCGCCGCGTGAAATTATCACTCAGTGGCAGGAGACGGATCTGCAATTCATC
CAGCGTATTTTGTCTGAGGTGGGAATTTACTGGCGCACGATGATGGACGATGTGCGCGATCTGGATACGTACATTTTTGC
CGACAGCCAGCTTAACTACCAGTTTGATGTGCGCCTGCCGTACAGCGAGCCATCGGGTCTGTTCGACGGCGCGGCAGAAT
CGGTCTGGGATGTGCGGACCTGGCACAACATAGCCACCGGCACTGTCGTCACGCGGGATTACAACTACCGGACCGCCACC
ACGCCGATGGATGCGGCGGTGAGTGTGCGCAGTGATGCGGTCACCACCGGGGAGCATTACCGCTACGCGGCACCTTATCG
TGAAGCGGGCGATGACGCCAGCCCGGAGCCGGAAACCGAATCTGGCGCGTTCTACGCCCGACTTCACCACGAGCGGGAGC
TCAACAGGTCGGCCCGCATTCACCTGTTCAGCAATGCTGCACACCTCACTCCCGGGCAGGTGCTGGAGCCGCAGGGCGAC
GTCATTACGGCCCTGCAAGAAGGCGTGTTCCTCACGCTGGTGACCTTCCGTGGCGCCCGTGATTCCCGTCTGCATGTGTC
AGTCTGGGGCCAGCCTTACACCGAACGTTACTGCTTCCGTCCGGTAGAGATCCCTCGCCCGGTCATCCCGGGTACGCTTC
CGGCCCGGATCGAAAGTCGCGAAAAAAATGATACCTACGCCCACCTGGACGAGCAGGGGCGCTATCGGGTGAAACTGGAC
TTCGACCGGGAGGGGACGGAATCCGGTTACGGTTACCTGTGGCTGCGGATGGCGAAGCCGTACGCCGGTGACACGCTGGG
CTGGCATACGCCGCTCACCGACGGAACCGAAGTGGCGATTGCGTACAGCAACGGTGATATTGACCTGCCGTACATCGCGT
ATGCGCTTCACGACTCAGAACATCCGGACCATGTGAACCGGGACAACCACACCCGCAACGTGCTGCGCACCCCGGCGAAT
AACAAGCTGCGGATGGAAGACAGGCGCGGGGAAGAGCACATCAAACTCGCCACGGAGTACGGCAAGACGCAGCTCAACAG
CGGGCACCTGGTGAACAGCAAGGGAGAGACTCGCGGCAGAGGCGCAGAGCTGCGCACCGACGAGTGGGGAACACTGCGAG
CCGGAAAGGGGCTGTTTGTCAGCGCCGACGCGCAGGCGAAGGCACAGGGCGAGGTGCTGGATATGAGCGCCGCGCTGGAG
GAAATCGACAGGCTCAACCAGCAGTTGCAGCAGATGGAAATCGCGGCAGAGCAGGCGCAGGCGCTGAAGGCGGATGTGGA
CAGCCAGATACGGATGTTTGAGCAGCGGCTGAAGCCGCTCAGTGAGGCGCTGCTGATGTCCGCCCCGGAAGGGATGGCGC
TGACCAGCGGGGAGCATATGCAGATGACGGCCACGAAAAACGTCGCGATAAATGCGGGCGGCGACGCAAGTATCGGTGCG
ATGGGCAATATGACAGCGCTGGCCGGAGATAAACTGGGGCTCTTTGCCCGTACGGGCCAGCTGAGCATGAAGGCCAGCGA
AGGTCCGGTGGAAATGCAGGCGCAGAATGCGGCTATGCGGCTGTTTGCGGAGAAGAAGCTGACGATGAGCTCAGCGAGTG
ACATCTCGTTTGCCGGGAAGAAACGCATCACGCTGGTCGGTGGCGGGAGTTATCTGCGGCTGGAGGCGGGAAAGGTCGAG
TATGGTACGACGGCGTCTTATTTACGCAAAGTGAAGCGGACGATGGCTGCATCAGCCAGTGCTAAACCTGTGCAAGCCGT
ATCCTTGCCGCCTCCGGCGACCATGCGAGAATTCAATCCCGAAACGCTCGCCCCCTGGGTGACGCCGGTGTATGCAAAAT
CCTGCCTGAAGGAGAAAGGCTGCACGGATGCCGGAACTGCCGAAGAGCCCGTTGATAATTTTGGACAGATGACAATTTTT
GCCCAGCCTGTTGAGGACGACTGCTGCGGTTACGGTCATCAGCATGAGCATGCAGATGATGAAGTCGTTCAGCATGCACA
GTCAGCCAAAAAACGTAAGCCTGACGCCGGGGGCGAAAATGCTCCAGCTCAGGCAACGGCTGCCCCGCTTGCTCTGGGAG
CTGCTACTGGCTTGATGACCCAGGTCTGGGGGGAATGGTCCCTGACCGGCGCATTGGGCGCGGCCCGGGGAATTCCGTAT
GTAGGCGCGATGATGTCCGCGCTCTACGTTCCTTCTGCGGGTGAGGGGAGTGACAGGGTTCCTGGGCGAGACGAGTTCTG
GTACGAGGAGGAACTGCGGCAGAAATCCCTCACCGGAGCAAAAGCGACAACCCGGGTGAGATTCTTCTGGCGACAGGATG
AGCAGGGCAACATGCGGGTCTACGGCGTTCATACGGGGGAAGGCACCCCGTATGAAGGTGTGCGCACGGCTGAAATGAAG
TGGGTTGAAAAAAATAGCCGCTATGAGTTCAAACCAGCTCACGGAGCTGATGTTCCTCTGATTACCTGGACGCCCGAACG
ACCGGAGGGCGGCGATTTACCCGCTCATACAGGAAGCGACATAAAACCCATCGACCAGGCTACGATACTCGTCACGCCAA
TACCAGACGGAAAAGATGAATACACGACGCCGCCATTCCCGATGCCGGAAGAGCGGGATCTTAACGATTACATTCTGGTG
TTCCCTGCCGGTTCCGGGATTAAGCCGGTTTATGTTTATCTGAAAGATGATTCACGAAATCAACCCGGAACAGCTACTGG
CAACGGTGTAAAACTATCCGGAGATAAACCCTGGCTAGATTTATCCGTAACAAACAAGGGAAATGGAGCCCCAATTCCAA
GTCATATTGCTGATAAGTTAAGAGGTAGAAGTTATGGATCTTTTGACGATCTAAGAGAAGATTTATGGGAAGAGATAAGT
AATGACCCAAAACTTATGGCTCAGTTTGGTGAAGATAACCAAGAACGTATTAGTAATGGGCTAGCACCTTGGGTTCCATC
AGATGGATACTATCATGGGCCAAATGAGGTTGTTAAAAAATTTCAGATACATCATGATCAAGCGATTGAAGATGGCGGTG
GTGTTTATGATTTAGATAATCTAAGAATCGTCACCCCTCGGTTACATGATGAGATTCACTATAGGAGGTAA