Detailed information of component protein
Summary
| Component ID | T6CP002372 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00237  (Type i2) |
| Strain | Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SARI_RS12145 |
| Coordinate (Strand) | 2519050..2519553 (-) |
| NCBI ID | WP_048908566.1 |
| RefSeq | NC_010067 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 6.8e-31 | 37..157 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 168 a.a.
>T6CP002372 NC_010067:c2519553-2519050 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssJ]
IWKTISIFNPSAGCGLTQTVTDGTVSITKSIFYKKIKTLHLDFTPRTAINADGAQTPLATMVRVYQLRDSKAIDAADYQT
LLRKADTVLNDDVLASKELLVMPNGSVTLNMPMDEDAQFVAVVGLFNRPDQKDNRWRLVLTRDDLDPDKPRIIELGDGWL
SLVPVKE*
IWKTISIFNPSAGCGLTQTVTDGTVSITKSIFYKKIKTLHLDFTPRTAINADGAQTPLATMVRVYQLRDSKAIDAADYQT
LLRKADTVLNDDVLASKELLVMPNGSVTLNMPMDEDAQFVAVVGLFNRPDQKDNRWRLVLTRDDLDPDKPRIIELGDGWL
SLVPVKE*
Nucleotide sequence: 504 bp
>T6CP002372 NC_010067:c2519553-2519050 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssJ]
ATCTGGAAAACCATCAGTATATTTAACCCTTCCGCAGGCTGCGGTCTGACGCAGACCGTCACGGATGGCACAGTCAGCAT
CACGAAATCCATCTTCTACAAAAAAATTAAAACGCTGCATCTGGATTTTACCCCGCGCACGGCCATTAACGCCGATGGCG
CGCAGACGCCGCTGGCAACGATGGTGAGGGTTTATCAGCTCAGGGACAGTAAAGCGATTGATGCCGCTGATTACCAGACG
CTGCTGCGCAAGGCAGATACGGTACTTAACGACGATGTGCTGGCGTCGAAAGAGCTGCTGGTGATGCCCAACGGCAGCGT
GACGCTCAATATGCCTATGGATGAAGATGCTCAGTTCGTGGCTGTTGTGGGGTTGTTTAACCGCCCGGATCAGAAGGACA
ACCGCTGGCGGCTGGTACTGACCCGTGACGACCTCGATCCGGACAAACCCCGGATCATCGAGCTGGGTGATGGCTGGCTC
AGCCTTGTGCCGGTAAAGGAGTGA
ATCTGGAAAACCATCAGTATATTTAACCCTTCCGCAGGCTGCGGTCTGACGCAGACCGTCACGGATGGCACAGTCAGCAT
CACGAAATCCATCTTCTACAAAAAAATTAAAACGCTGCATCTGGATTTTACCCCGCGCACGGCCATTAACGCCGATGGCG
CGCAGACGCCGCTGGCAACGATGGTGAGGGTTTATCAGCTCAGGGACAGTAAAGCGATTGATGCCGCTGATTACCAGACG
CTGCTGCGCAAGGCAGATACGGTACTTAACGACGATGTGCTGGCGTCGAAAGAGCTGCTGGTGATGCCCAACGGCAGCGT
GACGCTCAATATGCCTATGGATGAAGATGCTCAGTTCGTGGCTGTTGTGGGGTTGTTTAACCGCCCGGATCAGAAGGACA
ACCGCTGGCGGCTGGTACTGACCCGTGACGACCTCGATCCGGACAAACCCCGGATCATCGAGCTGGGTGATGGCTGGCTC
AGCCTTGTGCCGGTAAAGGAGTGA