Detailed information of component protein


Summary

Component ID T6CP002371
Component protein type TssI
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (766 a.a.); Nucleotide sequence (2298 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SARI_RS12140
Coordinate (Strand) 2516748..2519045 (-)
NCBI ID WP_000371004.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.7e-57 33..339
T6SS_Vgr PF13296.8 3.8e-33 476..576
DUF2345 PF10106.11 7.2e-32 603..727
Phage_base_V PF04717.14 2.8e-08 390..456
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 766 a.a.    

>T6CP002371 NC_010067:c2519045-2516748 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssI]
MDNWLALFDGQTRYFLDINDSTVKPDVLRFRGREALSEPFKWDIEFTTPQANISPEEVLMKYASFRMRSGKNVHGVVTRL
EWLSTTRDQSLYRLTLSSRLALLEHTRQCAVFQSQSVPEVVEQVLRKHGLEGPDFEFRLERTYPPRELITQWRETDLQFI
QRILSEVGIYWRTVMDDVRGLDTYILADSQLNYRFDVRLPYREPSGLFDGAAESVWDVRTWHTIATGTVMTRDYNYRTAS
TPMDAAVSVRNDAVTTGEHYRYAVPYREAGDDSSPEPETESGAFYARIHHERELNKSSRIHLFSNAAHLTPGQVLEPQGD
VITALQEGVFLTLVTFRGARDSRLHVSVWGQPYTERYCFRPVEIPRPVIPGTLPARIESREKNDIYAHLDEQGRYRVKLD
FDREGTESGYGYLWLRMAKPYAGDTLGWHTPLTDGTEVAIAYSNGDIDLPYIAYALHDSEHPDHVTRDNPTRNVLRTPAN
NKLRMEDKRGEEHVKLATEYGKTQLNSGHLVNSKGETRGRGAELRTDEWGTLRAGKGLFVSADAQAKAQGEVLDMSAALE
EIDRLNQQLQQLEIAAEQAQALKADVDSQIRMFEQRLKPLSEALLMYAPEGMALTSGEHLQMTATKNVAMNAGGNFSAGV
MGNLTALAGEKLGLFARTGQLSLKVSEGPVEVQAQNASMRLFAEKKLTLSSASDISFAGKKRITLVGGGSYLRLEAGKVE
YGTMATYMRKVKRTMAAGANSIDVDIPSIAGEVSILSFTKKILFS*

  Nucleotide sequence: 2298 bp    

>T6CP002371 NC_010067:c2519045-2516748 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssI]
ATGGATAACTGGCTGGCGCTTTTTGACGGACAGACCCGTTACTTTCTGGATATTAATGACAGTACAGTGAAGCCGGATGT
TTTGCGCTTTCGTGGCAGGGAAGCGCTGAGCGAGCCGTTTAAGTGGGATATTGAGTTCACTACTCCGCAGGCGAACATTT
CCCCGGAGGAGGTGCTGATGAAATATGCCTCCTTTCGTATGCGCAGCGGCAAAAACGTTCACGGTGTTGTCACCCGCCTG
GAGTGGCTTTCCACTACCCGGGATCAGTCTCTCTACCGGCTCACGCTCAGTTCCCGGCTGGCGCTGCTGGAGCACACCCG
CCAGTGCGCCGTATTTCAGAGCCAGTCGGTGCCGGAGGTGGTGGAGCAGGTACTGCGCAAACACGGGCTGGAGGGACCTG
ATTTTGAATTCAGGCTGGAGCGCACCTACCCGCCGCGTGAACTTATCACCCAGTGGCGGGAAACGGATTTACAGTTCATC
CAGCGCATTCTGTCCGAGGTGGGGATTTACTGGCGTACGGTGATGGACGACGTGCGCGGTCTGGATACGTACATACTGGC
CGACAGCCAGCTTAACTACCGGTTTGATGTGCGTCTGCCGTACCGCGAGCCGTCGGGCCTGTTCGACGGCGCGGCAGAGT
CGGTCTGGGATGTGCGGACCTGGCACACCATAGCCACCGGCACCGTCATGACGCGGGATTACAACTACCGGACAGCCAGC
ACGCCGATGGATGCGGCGGTCAGCGTACGTAATGATGCGGTCACCACCGGAGAGCATTACCGCTACGCCGTGCCTTACCG
TGAGGCGGGTGATGACAGCAGCCCGGAGCCGGAAACCGAATCCGGGGCGTTCTATGCGCGCATCCATCACGAGCGGGAGC
TGAATAAATCGTCCCGCATTCATCTGTTCAGCAATGCTGCACACCTCACTCCCGGGCAGGTGCTGGAGCCGCAGGGCGAC
GTCATTACGGCCCTGCAAGAAGGCGTGTTCCTCACGCTGGTGACCTTCCGTGGCGCCCGTGATTCCCGTCTGCATGTGTC
AGTCTGGGGCCAGCCTTACACCGAACGTTACTGCTTCCGTCCGGTAGAGATCCCTCGCCCGGTCATCCCGGGTACGCTTC
CGGCCCGGATAGAGAGCCGGGAGAAGAACGACATTTACGCTCACCTGGACGAGCAGGGGCGCTATCGGGTGAAACTGGAC
TTCGACCGGGAGGGGACGGAATCCGGTTACGGTTACCTGTGGCTGCGGATGGCGAAGCCGTACGCCGGTGACACGCTGGG
CTGGCATACGCCGCTCACCGACGGGACCGAAGTGGCGATTGCGTACAGCAACGGTGATATTGACCTGCCGTACATCGCGT
ATGCGCTGCACGACTCGGAGCACCCGGACCACGTCACCCGCGACAACCCTACCCGTAACGTGTTACGCACGCCCGCGAAC
AATAAGCTGCGGATGGAAGACAAGCGCGGTGAGGAGCACGTCAAGCTCGCCACGGAATACGGCAAGACGCAGCTCAACAG
CGGGCACCTGGTGAACAGCAAGGGAGAGACTCGCGGCAGAGGCGCAGAGCTGCGCACCGACGAGTGGGGAACACTGCGAG
CCGGAAAGGGGCTGTTTGTCAGCGCCGACGCGCAGGCGAAGGCACAGGGCGAGGTGCTGGATATGAGCGCCGCGCTGGAG
GAAATCGACAGGCTCAACCAGCAGTTGCAGCAGCTGGAAATCGCGGCAGAGCAGGCGCAGGCGCTGAAGGCGGATGTGGA
CAGCCAGATACGGATGTTTGAGCAGAGGCTGAAGCCGCTCAGTGAGGCGCTGCTGATGTACGCCCCGGAAGGGATGGCGC
TGACCAGCGGGGAGCATCTGCAGATGACGGCCACGAAAAACGTTGCCATGAATGCCGGAGGCAATTTCAGTGCTGGCGTG
ATGGGCAATCTGACCGCGCTGGCCGGGGAGAAACTGGGGCTGTTTGCGCGGACGGGGCAACTGAGTCTCAAAGTCAGCGA
AGGTCCGGTGGAGGTGCAGGCGCAGAATGCCAGTATGCGGTTGTTTGCGGAGAAGAAGCTGACGCTGAGTTCGGCAAGTG
ACATCTCGTTTGCCGGGAAGAAACGCATCACGCTGGTCGGTGGCGGGAGTTATCTGCGGCTGGAGGCGGGAAAGGTGGAG
TACGGTACGATGGCGACGTATATGCGGAAGGTGAAAAGAACGATGGCGGCGGGAGCAAATTCAATTGATGTTGATATTCC
GTCTATTGCAGGTGAGGTATCAATTTTATCTTTCACAAAAAAAATTCTGTTCTCATAA