Detailed information of component protein
Summary
| Component ID | T6CP002253 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00225  (Type i3) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (187 a.a.); Nucleotide sequence (561 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS18510 |
| Coordinate (Strand) | 3872664..3873224 (-) |
| NCBI ID | WP_002210481.1 |
| RefSeq | NC_009708 |
| Uniprot ID | Q66EQ1_YERPS, A0A0U1QWX4_YERP3, A0A0E1NXP0_YERPA, A0A0H2YDR0_YERPN, A0A0H3B806_YERPY, A0A2U2H085_YERPE, A0A3G5IR31_YERPU |
| KEGG ID | ypa:YPA_4095, ypq:DJ40_1728, ypn:YPN_0375, ypc:BZ23_117, yps:YPTB0641, ypo:BZ17_1916, ypu:BZ21_4023, ypr:BZ20_1454, ypy:YPK_3565, ypi:YpsIP31758_3436, ype:YPO0500 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1.6e-54 | 13..163 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-186 | MAKDASSQKFIGRNNAPRVQIEYDVEIYGSNKKVELPFVTGVMADLSGHRAKPLPAVEDRKFLTFDQDNFDARMRAIKPRLKFYVDNTLSEDNELLDIELDFESMDDFSPGSLARRIPQMEKLLEARTHLAELITYMDGKTSAEEVVKQLLEQPDFLQNLATDAQGTISKLSQDDDVLVEDDDGEK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9956 | - | - |
Protein sequence: 187 a.a.
>T6CP002253 NC_009708:c3873224-3872664 [Yersinia pseudotuberculosis IP 31758] [TssB]
MAKDASSQKFIGRNNAPRVQIEYDVEIYGSNKKVELPFVTGVMADLSGHRAKPLPAVEDRKFLTFDQDNFDARMRAIKPR
LKFYVDNTLSEDNELLDIELDFESMDDFSPGSLARRIPQMEKLLEARTHLAELITYMDGKTSAEEVVKQLLEQPDFLQNL
ATDAQGTISKLSQDDDVLVEDDDGEK*
MAKDASSQKFIGRNNAPRVQIEYDVEIYGSNKKVELPFVTGVMADLSGHRAKPLPAVEDRKFLTFDQDNFDARMRAIKPR
LKFYVDNTLSEDNELLDIELDFESMDDFSPGSLARRIPQMEKLLEARTHLAELITYMDGKTSAEEVVKQLLEQPDFLQNL
ATDAQGTISKLSQDDDVLVEDDDGEK*
Nucleotide sequence: 561 bp
>T6CP002253 NC_009708:c3873224-3872664 [Yersinia pseudotuberculosis IP 31758] [TssB]
ATGGCCAAAGATGCGAGCTCGCAAAAATTTATCGGTAGAAATAATGCACCTAGAGTGCAAATTGAATATGACGTCGAAAT
TTATGGTTCAAATAAGAAAGTAGAGTTGCCTTTTGTAACCGGCGTGATGGCTGATCTTTCTGGCCACAGGGCAAAGCCTC
TTCCCGCCGTTGAAGATCGTAAATTCCTTACTTTCGATCAGGATAATTTCGATGCCCGGATGAGAGCAATTAAGCCTCGC
CTTAAATTCTACGTAGATAACACCTTGAGTGAGGATAACGAACTCCTGGATATCGAACTGGATTTTGAGTCAATGGATGA
CTTTTCTCCCGGATCGTTAGCGCGGCGTATTCCTCAAATGGAAAAACTGCTTGAGGCACGTACCCATCTGGCTGAATTGA
TCACCTATATGGATGGTAAAACCAGCGCAGAAGAGGTGGTTAAACAACTGCTTGAACAACCTGATTTTTTACAAAATCTT
GCGACCGATGCACAGGGAACTATTTCGAAGCTCAGCCAGGATGATGATGTTTTAGTGGAAGATGACGATGGAGAAAAATA
G
ATGGCCAAAGATGCGAGCTCGCAAAAATTTATCGGTAGAAATAATGCACCTAGAGTGCAAATTGAATATGACGTCGAAAT
TTATGGTTCAAATAAGAAAGTAGAGTTGCCTTTTGTAACCGGCGTGATGGCTGATCTTTCTGGCCACAGGGCAAAGCCTC
TTCCCGCCGTTGAAGATCGTAAATTCCTTACTTTCGATCAGGATAATTTCGATGCCCGGATGAGAGCAATTAAGCCTCGC
CTTAAATTCTACGTAGATAACACCTTGAGTGAGGATAACGAACTCCTGGATATCGAACTGGATTTTGAGTCAATGGATGA
CTTTTCTCCCGGATCGTTAGCGCGGCGTATTCCTCAAATGGAAAAACTGCTTGAGGCACGTACCCATCTGGCTGAATTGA
TCACCTATATGGATGGTAAAACCAGCGCAGAAGAGGTGGTTAAACAACTGCTTGAACAACCTGATTTTTTACAAAATCTT
GCGACCGATGCACAGGGAACTATTTCGAAGCTCAGCCAGGATGATGATGTTTTAGTGGAAGATGACGATGGAGAAAAATA
G