Detailed information of component protein


Summary

Component ID T6CP002253
Component protein type TssB
T6SS ID (Type) T6SS00225 experimental (Type i3)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (187 a.a.); Nucleotide sequence (561 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) YPSIP31758_RS18510
Coordinate (Strand) 3872664..3873224 (-)
NCBI ID WP_002210481.1
RefSeq NC_009708
Uniprot ID Q66EQ1_YERPS, A0A0U1QWX4_YERP3, A0A0E1NXP0_YERPA, A0A0H2YDR0_YERPN, A0A0H3B806_YERPY, A0A2U2H085_YERPE, A0A3G5IR31_YERPU
KEGG ID ypa:YPA_4095, ypq:DJ40_1728, ypn:YPN_0375, ypc:BZ23_117, yps:YPTB0641, ypo:BZ17_1916, ypu:BZ21_4023, ypr:BZ20_1454, ypy:YPK_3565, ypi:YpsIP31758_3436, ype:YPO0500
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1.6e-54 13..163

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-186 MAKDASSQKFIGRNNAPRVQIEYDVEIYGSNKKVELPFVTGVMADLSGHRAKPLPAVEDRKFLTFDQDNFDARMRAIKPRLKFYVDNTLSEDNELLDIELDFESMDDFSPGSLARRIPQMEKLLEARTHLAELITYMDGKTSAEEVVKQLLEQPDFLQNLATDAQGTISKLSQDDDVLVEDDDGEK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9956 - -



  Protein sequence: 187 a.a.    

>T6CP002253 NC_009708:c3873224-3872664 [Yersinia pseudotuberculosis IP 31758] [TssB]
MAKDASSQKFIGRNNAPRVQIEYDVEIYGSNKKVELPFVTGVMADLSGHRAKPLPAVEDRKFLTFDQDNFDARMRAIKPR
LKFYVDNTLSEDNELLDIELDFESMDDFSPGSLARRIPQMEKLLEARTHLAELITYMDGKTSAEEVVKQLLEQPDFLQNL
ATDAQGTISKLSQDDDVLVEDDDGEK*

  Nucleotide sequence: 561 bp    

>T6CP002253 NC_009708:c3873224-3872664 [Yersinia pseudotuberculosis IP 31758] [TssB]
ATGGCCAAAGATGCGAGCTCGCAAAAATTTATCGGTAGAAATAATGCACCTAGAGTGCAAATTGAATATGACGTCGAAAT
TTATGGTTCAAATAAGAAAGTAGAGTTGCCTTTTGTAACCGGCGTGATGGCTGATCTTTCTGGCCACAGGGCAAAGCCTC
TTCCCGCCGTTGAAGATCGTAAATTCCTTACTTTCGATCAGGATAATTTCGATGCCCGGATGAGAGCAATTAAGCCTCGC
CTTAAATTCTACGTAGATAACACCTTGAGTGAGGATAACGAACTCCTGGATATCGAACTGGATTTTGAGTCAATGGATGA
CTTTTCTCCCGGATCGTTAGCGCGGCGTATTCCTCAAATGGAAAAACTGCTTGAGGCACGTACCCATCTGGCTGAATTGA
TCACCTATATGGATGGTAAAACCAGCGCAGAAGAGGTGGTTAAACAACTGCTTGAACAACCTGATTTTTTACAAAATCTT
GCGACCGATGCACAGGGAACTATTTCGAAGCTCAGCCAGGATGATGATGTTTTAGTGGAAGATGACGATGGAGAAAAATA
G