Detailed information of component protein
Summary
| Component ID | T6CP002251 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00225  (Type i3) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS18500 |
| Coordinate (Strand) | 3870472..3870990 (-) |
| NCBI ID | WP_002210479.1 |
| RefSeq | NC_009708 |
| Uniprot ID | A0A0E8XF43_9GAMM, Q66EP9_YERPS, A0A0U1QXZ8_YERP3, A0A0E1NMA6_YERPA, A0A0H2YFS6_YERPN, Q0WJG3_YERPE, A0A3G5IR49_YERPU |
| KEGG ID | ypu:BZ21_4025, ypo:BZ17_1914, ypn:YPN_0377, ypq:DJ40_1726, ypi:YpsIP31758_3434, yps:YPTB0643, ypr:BZ20_1452, ype:YPO0502, ypa:YPA_3594, ypc:BZ23_119 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.3e-38 | 8..147 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MAALVDYFLHIEGVDGESPDQQYNGWIQVQAWQWAEENAGRWGLGGGGGSGKVEMKDFEFRMVSNKASPKLFLMCAIGEHIPQAKLVCRKSGQGQQDFLIVTFSNCLVSSFKTVGNMPLGKGDAVFTDTVLPTDAISLNFARIEVEYKEQQPDGSMGAVIKAGYDLKLNSRI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9866 | - | - |
Protein sequence: 173 a.a.
>T6CP002251 NC_009708:c3870990-3870472 [Yersinia pseudotuberculosis IP 31758] [TssD]
MAALVDYFLHIEGVDGESPDQQYNGWIQVQAWQWAEENAGRWGLGGGGGSGKVEMKDFEFRMVSNKASPKLFLMCAIGEH
IPQAKLVCRKSGQGQQDFLIVTFSNCLVSSFKTVGNMPLGKGDAVFTDTVLPTDAISLNFARIEVEYKEQQPDGSMGAVI
KAGYDLKLNSRI*
MAALVDYFLHIEGVDGESPDQQYNGWIQVQAWQWAEENAGRWGLGGGGGSGKVEMKDFEFRMVSNKASPKLFLMCAIGEH
IPQAKLVCRKSGQGQQDFLIVTFSNCLVSSFKTVGNMPLGKGDAVFTDTVLPTDAISLNFARIEVEYKEQQPDGSMGAVI
KAGYDLKLNSRI*
Nucleotide sequence: 519 bp
>T6CP002251 NC_009708:c3870990-3870472 [Yersinia pseudotuberculosis IP 31758] [TssD]
ATGGCAGCTTTAGTCGATTACTTTCTCCATATCGAAGGTGTAGATGGTGAGTCTCCCGATCAGCAGTATAACGGATGGAT
CCAAGTACAGGCTTGGCAATGGGCGGAGGAGAATGCGGGGCGCTGGGGGCTAGGTGGCGGTGGTGGTTCTGGGAAAGTCG
AAATGAAGGACTTCGAATTTCGCATGGTGAGTAACAAAGCATCACCAAAACTATTTTTGATGTGTGCCATCGGTGAACAC
ATTCCGCAGGCCAAGTTGGTGTGTCGTAAATCAGGTCAAGGTCAACAAGACTTCCTGATTGTTACCTTCAGTAACTGTCT
GGTGTCCTCCTTTAAAACTGTCGGCAACATGCCTCTTGGTAAAGGGGACGCAGTATTCACCGACACGGTGCTGCCAACGG
ATGCCATCAGCCTTAACTTTGCACGTATCGAAGTGGAATACAAAGAGCAGCAACCTGATGGCTCGATGGGGGCCGTGATT
AAGGCTGGTTACGATCTGAAATTGAACAGCCGTATTTAA
ATGGCAGCTTTAGTCGATTACTTTCTCCATATCGAAGGTGTAGATGGTGAGTCTCCCGATCAGCAGTATAACGGATGGAT
CCAAGTACAGGCTTGGCAATGGGCGGAGGAGAATGCGGGGCGCTGGGGGCTAGGTGGCGGTGGTGGTTCTGGGAAAGTCG
AAATGAAGGACTTCGAATTTCGCATGGTGAGTAACAAAGCATCACCAAAACTATTTTTGATGTGTGCCATCGGTGAACAC
ATTCCGCAGGCCAAGTTGGTGTGTCGTAAATCAGGTCAAGGTCAACAAGACTTCCTGATTGTTACCTTCAGTAACTGTCT
GGTGTCCTCCTTTAAAACTGTCGGCAACATGCCTCTTGGTAAAGGGGACGCAGTATTCACCGACACGGTGCTGCCAACGG
ATGCCATCAGCCTTAACTTTGCACGTATCGAAGTGGAATACAAAGAGCAGCAACCTGATGGCTCGATGGGGGCCGTGATT
AAGGCTGGTTACGATCTGAAATTGAACAGCCGTATTTAA