Detailed information of component protein
Summary
| Component ID | T6CP002250 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00225  (Type i3) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (148 a.a.); Nucleotide sequence (444 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS18495 |
| Coordinate (Strand) | 3869955..3870398 (-) |
| NCBI ID | WP_002210478.1 |
| RefSeq | NC_009708 |
| Uniprot ID | A0A0E8XJ02_9GAMM, Q66EP8_YERPS, A0A0U1QX54_YERP3, A0A0E1NS54_YERPA, A0A0H2YDT9_YERPN, A0A0H3B5N3_YERPY, A0A5P8YL33_YERPE, A0A0T9JBG1_YERPU |
| KEGG ID | ypc:BZ23_120, ype:YPO0503, ypr:BZ20_1451, ypo:BZ17_1913, ypq:DJ40_1725, ypn:YPN_0378, ypu:BZ21_4026, ypy:YPK_3562, ypi:YpsIP31758_3433, ypa:YPA_3593, yps:YPTB0644 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 4.8e-12 | 25..121 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-147 | MDISAPILFDKLSLRHEHVRLPHWREVIVRDIESLLNDSAHSARLKLKKYPHCEASVLNYGLPSLSQQVPVITDLLELARHIQRIIATFESRLDPRSIKVVPLINKGETWVLAILFDIHARCNLPGEEHLVNLRIALDYSYGMVRVL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9964 | - | - |
Protein sequence: 148 a.a.
>T6CP002250 NC_009708:c3870398-3869955 [Yersinia pseudotuberculosis IP 31758] [TssE]
MDISAPILFDKLSLRHEHVRLPHWREVIVRDIESLLNDSAHSARLKLKKYPHCEASVLNYGLPSLSQQVPVITDLLELAR
HIQRIIATFESRLDPRSIKVVPLINKGETWVLAILFDIHARCNLPGEEHLVNLRIALDYSYGMVRVL*
MDISAPILFDKLSLRHEHVRLPHWREVIVRDIESLLNDSAHSARLKLKKYPHCEASVLNYGLPSLSQQVPVITDLLELAR
HIQRIIATFESRLDPRSIKVVPLINKGETWVLAILFDIHARCNLPGEEHLVNLRIALDYSYGMVRVL*
Nucleotide sequence: 444 bp
>T6CP002250 NC_009708:c3870398-3869955 [Yersinia pseudotuberculosis IP 31758] [TssE]
ATGGATATTTCAGCACCGATACTTTTTGACAAATTAAGTCTCCGCCATGAACACGTTCGCTTACCTCATTGGCGTGAAGT
GATTGTGCGCGATATTGAATCTTTATTGAATGACTCCGCACACAGTGCCCGGTTGAAGCTAAAAAAGTATCCGCATTGTG
AGGCTTCCGTATTGAATTACGGCCTGCCTTCGCTCAGCCAGCAGGTTCCGGTAATCACCGACTTGCTGGAACTGGCCAGA
CATATACAGCGGATCATCGCCACGTTTGAGTCACGCCTGGATCCGCGCTCAATAAAAGTGGTGCCGCTGATTAATAAAGG
CGAAACCTGGGTGTTAGCCATCCTGTTTGACATTCATGCCCGGTGCAACCTACCGGGCGAAGAGCACTTGGTCAATTTAC
GCATCGCGCTCGATTACTCCTATGGAATGGTTCGCGTTCTTTAA
ATGGATATTTCAGCACCGATACTTTTTGACAAATTAAGTCTCCGCCATGAACACGTTCGCTTACCTCATTGGCGTGAAGT
GATTGTGCGCGATATTGAATCTTTATTGAATGACTCCGCACACAGTGCCCGGTTGAAGCTAAAAAAGTATCCGCATTGTG
AGGCTTCCGTATTGAATTACGGCCTGCCTTCGCTCAGCCAGCAGGTTCCGGTAATCACCGACTTGCTGGAACTGGCCAGA
CATATACAGCGGATCATCGCCACGTTTGAGTCACGCCTGGATCCGCGCTCAATAAAAGTGGTGCCGCTGATTAATAAAGG
CGAAACCTGGGTGTTAGCCATCCTGTTTGACATTCATGCCCGGTGCAACCTACCGGGCGAAGAGCACTTGGTCAATTTAC
GCATCGCGCTCGATTACTCCTATGGAATGGTTCGCGTTCTTTAA