Detailed information of component protein


Summary

Component ID T6CP002249
Component protein type TssF
T6SS ID (Type) T6SS00225 experimental (Type i3)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (615 a.a.); Nucleotide sequence (1845 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS18490
Coordinate (Strand) 3868078..3869922 (-)
NCBI ID WP_011191714.1
RefSeq NC_009708
Uniprot ID Q66EP7_YERPS, A0A0U1QY77_YERP3
KEGG ID yps:YPTB0645, ypi:YpsIP31758_3432, ypo:BZ17_1912
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1e-122 4..609
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-614 MPNESFLALYNEELRYLREDGQRFAHMHPQVAQHLGLHADGVLDPFVERLLEGTAFLSSRIQQRLNNEHPEFALQMLGRLAPLWYTPLPSIATIAMVPDLTSPQWHSRVVLPKGSRVTLSDSSLNNRLANFSTGRTLKIQPLVIENAECASTPPAYLPLSVASQLQAGQAHLRLRLTTQGVASLSELDFAPMNLTLAGGIIQSNQLITTLLNNTLHIVLWANTDGKPLVKVLTKEHLRQGGLDEQEALLPVAISEMPGNRLLREYFAAPSRFFDLELHGLNDFLQQGDGIHTFEVLFVLDQRPLHLIDRVTGNDFRLFATPIINLFKRRCSPVLINGEHTEYPVIVDPLNPRLYEVHHVLGVNGLLSEGGSVQFSSLHGHARFDDDDKVAGYSIRRRRDFTDKNHQKNSPLPHDSLFIALSPGTSGIDIDHVKSLSIEAMVCERHLIPSQLQHPEFKLEIALPVGQIEMLRHPAKPQGVPNIDQAWRALQLIANNPLRYALPDVTDCSPLLKDWLSIFCQHEEASQHKRITSLTHASVAHNFERHTAPGPIAWSRGVEATLDFNSSHHSDKGAFLFARILHHALSEYCELGQTLRLHMQVDGETFAKWGPVNYG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9961 - -


  Protein sequence: 615 a.a.    

>T6CP002249 NC_009708:c3869922-3868078 [Yersinia pseudotuberculosis IP 31758] [TssF]
MPNESFLALYNEELRYLREDGQRFAHMHPQVAQHLGLHADGVLDPFVERLLEGTAFLSSRIQQRLNNEHPEFALQMLGRL
APLWYTPLPSIATIAMVPDLTSPQWHSRVVLPKGSRVTLSDSSLNNRLANFSTGRTLKIQPLVIENAECASTPPAYLPLS
VASQLQAGQAHLRLRLTTQGVASLSELDFAPMNLTLAGGIIQSNQLITTLLNNTLHIVLWANTDGKPLVKVLTKEHLRQG
GLDEQEALLPVAISEMPGNRLLREYFAAPSRFFDLELHGLNDFLQQGDGIHTFEVLFVLDQRPLHLIDRVTGNDFRLFAT
PIINLFKRRCSPVLINGEHTEYPVIVDPLNPRLYEVHHVLGVNGLLSEGGSVQFSSLHGHARFDDDDKVAGYSIRRRRDF
TDKNHQKNSPLPHDSLFIALSPGTSGIDIDHVKSLSIEAMVCERHLIPSQLQHPEFKLEIALPVGQIEMLRHPAKPQGVP
NIDQAWRALQLIANNPLRYALPDVTDCSPLLKDWLSIFCQHEEASQHKRITSLTHASVAHNFERHTAPGPIAWSRGVEAT
LDFNSSHHSDKGAFLFARILHHALSEYCELGQTLRLHMQVDGETFAKWGPVNYG*

  Nucleotide sequence: 1845 bp    

>T6CP002249 NC_009708:c3869922-3868078 [Yersinia pseudotuberculosis IP 31758] [TssF]
ATGCCCAACGAAAGTTTTCTGGCTCTATACAACGAAGAGTTGCGTTATCTGCGTGAAGATGGGCAGCGCTTCGCTCATAT
GCATCCGCAAGTCGCCCAACACCTTGGGTTACATGCTGATGGTGTGCTCGATCCTTTCGTCGAACGGCTCCTTGAAGGCA
CCGCTTTCTTGAGTTCCCGTATCCAACAGCGTTTGAACAACGAGCATCCAGAGTTTGCTTTGCAAATGCTTGGGCGTTTG
GCCCCACTTTGGTATACACCCCTGCCGTCGATTGCCACCATTGCCATGGTTCCGGATCTTACGTCACCGCAATGGCACTC
GCGCGTCGTATTGCCTAAAGGTAGCCGCGTGACATTGAGTGACAGTTCGCTGAACAACCGGTTGGCGAATTTCTCTACTG
GCCGCACGCTGAAAATACAGCCATTGGTCATTGAAAATGCCGAGTGTGCCAGCACGCCACCGGCGTATTTACCGCTCTCT
GTGGCTTCACAATTACAAGCTGGTCAGGCCCATCTGCGCTTGCGTCTGACCACTCAAGGTGTCGCGTCTTTATCTGAGCT
GGATTTCGCCCCGATGAACCTGACGCTGGCGGGGGGAATAATTCAGTCAAATCAGTTAATCACGACACTGTTGAATAACA
CCTTACATATTGTTTTGTGGGCCAACACGGATGGGAAACCGCTGGTCAAAGTTCTTACCAAAGAACATCTTCGCCAGGGA
GGGCTGGATGAACAAGAGGCGCTTTTACCTGTTGCGATCAGCGAAATGCCTGGAAACCGTTTGCTACGAGAATATTTTGC
TGCTCCTTCGCGTTTTTTCGATCTGGAACTGCATGGCCTCAACGACTTCCTGCAACAAGGGGACGGCATTCATACCTTTG
AGGTGCTGTTTGTACTGGATCAGCGCCCCCTACATTTGATTGATAGGGTCACTGGCAATGACTTCCGACTCTTCGCCACA
CCTATTATTAACCTGTTCAAACGCCGTTGTAGCCCGGTGCTGATTAATGGTGAACACACCGAATATCCCGTCATTGTTGA
CCCCCTGAACCCCCGCTTGTACGAAGTCCATCATGTACTCGGGGTCAACGGTTTGTTGAGCGAAGGGGGGAGCGTGCAGT
TTTCTTCCCTTCATGGTCATGCCCGTTTTGATGATGACGATAAAGTGGCGGGTTACAGCATTCGCCGTCGCCGCGACTTC
ACGGATAAAAATCATCAGAAAAATTCACCTTTACCTCATGACAGCTTATTCATTGCCCTTTCACCGGGGACCAGCGGGAT
AGATATTGATCACGTCAAGTCGCTGTCGATTGAAGCCATGGTGTGCGAACGCCACTTAATTCCCAGCCAATTACAGCATC
CGGAATTCAAGCTGGAAATTGCCCTGCCAGTGGGGCAGATCGAAATGCTGCGTCACCCGGCAAAACCACAGGGTGTGCCG
AATATTGATCAAGCCTGGCGGGCGTTACAACTGATTGCCAACAATCCGCTGCGTTATGCGCTGCCGGATGTCACCGATTG
TTCGCCACTGCTAAAAGATTGGCTGTCGATATTTTGTCAGCATGAAGAGGCGAGCCAGCATAAGAGGATCACTAGCCTGA
CTCACGCCAGTGTGGCGCATAATTTTGAACGTCATACCGCTCCGGGGCCGATCGCCTGGAGCCGGGGGGTTGAAGCCACA
CTGGATTTCAACAGCAGCCACCACAGTGATAAAGGTGCATTCCTCTTTGCGCGGATCCTGCATCACGCGCTGTCAGAATA
TTGTGAATTAGGGCAGACCCTGAGGTTACACATGCAGGTTGATGGTGAAACCTTCGCCAAATGGGGGCCTGTCAACTATG
GCTAG