SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP002248
Component protein type	TssG
T6SS ID (Type)	T6SS00225 (Type i3)
Strain	Yersinia pseudotuberculosis IP 31758
Replicon	chromosome
Sequence	Protein sequence (328 a.a.); Nucleotide sequence (984 bp)
Reference	[1] Gueguen E, Durand E, Zhang XY, et al. Expression of a Yersinia pseudotuberculosis Type VI Secretion System Is Responsive to Envelope Stresses through the OmpR Transcriptional Activator. PLoS One. 2013 Jun 19;8(6):e66615. doi: 10.1371/journal.pone.0066615. Print 2013. PMID: 23840509

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	YPSIP31758_RS18485
Coordinate (Strand)	3867102..3868085 (-)
NCBI ID	WP_012105683.1
RefSeq	NC_009708
Uniprot ID	A0A0E8XH35_9GAMM, A0A0U1QYU2_YERP3
KEGG ID	ypi:YpsIP31758_3431
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	1.7e-61	19..312

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-327	MASLQTLKNTFLPGISASQDFFELLRRIERATPEQGRLGTQRDRSHLRLRIIQPADMGFAPREVSDIRQTLNTHQHLAEITIFCRHFGLFAPYGPLPIHVTEHARNEALAKRNQAFEHFAGILSQRMAILHYRSWAQMHVAVGHDRASANPFMNHVRQIVGLTPQQALNSHVDRVRRCFPGVYLPGRGSLRKLQEILSLYFSVPIRVEARKGLWIDDSRNIESQRMGRLGNTRIGSRFFDVQHSLVLSIGPVSDPQYLDFQRNSKRINTLVQICHDFVRHRMVLDVQLIIQTSPNMACRLGGGTLSRHSWLKPGSALSIQPIYRTVT

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9852	-	-

Protein sequence: 328 a.a.

						>T6CP002248 NC_009708:c3868085-3867102 [Yersinia pseudotuberculosis IP 31758] [TssG]
MASLQTLKNTFLPGISASQDFFELLRRIERATPEQGRLGTQRDRSHLRLRIIQPADMGFAPREVSDIRQTLNTHQHLAEI
TIFCRHFGLFAPYGPLPIHVTEHARNEALAKRNQAFEHFAGILSQRMAILHYRSWAQMHVAVGHDRASANPFMNHVRQIV
GLTPQQALNSHVDRVRRCFPGVYLPGRGSLRKLQEILSLYFSVPIRVEARKGLWIDDSRNIESQRMGRLGNTRIGSRFFD
VQHSLVLSIGPVSDPQYLDFQRNSKRINTLVQICHDFVRHRMVLDVQLIIQTSPNMACRLGGGTLSRHSWLKPGSALSIQ
PIYRTVT*					

Nucleotide sequence: 984 bp

						>T6CP002248 NC_009708:c3868085-3867102 [Yersinia pseudotuberculosis IP 31758] [TssG]
ATGGCTAGCCTCCAGACGCTGAAAAACACGTTTCTGCCGGGTATCTCGGCCAGTCAGGACTTTTTCGAGTTGCTGCGTCG
GATTGAGCGTGCCACTCCAGAGCAAGGCCGGCTTGGCACCCAACGTGATCGTAGCCACCTGAGGCTACGTATTATTCAGC
CTGCCGATATGGGATTTGCACCGCGTGAAGTGAGTGATATCAGGCAAACGCTGAACACTCATCAGCATCTGGCAGAGATC
ACCATTTTCTGCCGCCATTTTGGTTTATTTGCCCCGTATGGCCCGTTGCCAATACATGTTACCGAACATGCTCGTAACGA
AGCGTTGGCTAAACGTAATCAGGCCTTTGAACATTTTGCGGGCATTCTCAGCCAGCGAATGGCGATCTTGCATTATCGCT
CTTGGGCCCAAATGCACGTCGCCGTGGGGCATGATCGCGCGTCAGCCAATCCCTTTATGAACCATGTGCGTCAAATCGTG
GGCCTAACGCCGCAGCAAGCGCTGAATTCACATGTGGATCGGGTACGGCGTTGCTTTCCGGGGGTGTATCTGCCGGGCAG
AGGATCATTACGCAAATTACAGGAGATCCTGAGCCTGTATTTCTCGGTTCCTATTCGTGTTGAAGCCCGTAAAGGATTGT
GGATTGACGACTCGCGCAATATAGAAAGCCAACGTATGGGACGGTTGGGTAACACGCGTATTGGCAGCCGTTTCTTCGAT
GTGCAGCACAGCCTGGTGTTATCTATTGGTCCGGTATCTGACCCCCAATATCTGGATTTTCAACGCAACAGCAAACGCAT
TAACACTCTGGTGCAAATCTGCCATGACTTTGTCCGCCATCGGATGGTGCTGGACGTGCAATTAATCATACAGACCTCAC
CCAATATGGCTTGTCGTCTTGGCGGTGGAACGCTCAGCCGCCATAGCTGGTTAAAGCCAGGCTCAGCCTTGAGTATACAG
CCAATTTATAGAACGGTTACCTAG					