Detailed information of component protein


Summary

Component ID T6CP002246
Component protein type TssI
T6SS ID (Type) T6SS00225 experimental (Type i3)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (783 a.a.); Nucleotide sequence (2349 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS18475
Coordinate (Strand) 3862044..3864392 (-)
NCBI ID WP_012105682.1
RefSeq NC_009708
Uniprot ID A0A0U1QVE9_YERP3
KEGG ID ypi:YpsIP31758_3429
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 6.7e-71 25..326
Phage_base_V PF04717.14 4.2e-14 380..449
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-782 MQLIEIENEVLSGQDAFPLSFKTQEKVSGNPSYQLVFQVAEADLDLVSLLGEIIKVRIELPDSAGYRTFFTYVIAGADEGQRQDKFVYSLELSTWTWFLMQNRNCRIFQDLNIIDIIEQVFSKYNFADYRFDIVGNYRLREYCVQFAETDFDFVNRLMEDEGVWYYFEHNEDKHTLVMTDQQQFPVLEGHYAELSFLPDSEEMRAIREGIQRIQRSQRIHSSEIVLRDFDFLNPRNTLQTHIEESRQHLQGVPLEWYDYAAGYTDPQHGESIARLRLEAIQSNGQLLSGESNATGLVPGRSFALVQHPDNNRNRGFKLISCDYSFVQDGPDSASQGRNVACKFKALNDDVVYRPQCVTPPPKVPGVQSATVVGARESEVHTDKFARIRVHFHWDRYKTTEDDSSCWIRVVQAWAGKGWGVLAMPRVGQEVLVNYVDGDLDRPMVTGIVYNGENPPPYRLPDHINYSGFVSRSLRFGQPQHASQLTFDDNRGNERIMLHAERDLQRTVERNSATAVGQDKYDTVERTATEWINNHISYKDFSFSVTGMSVSATGISVSTTGTSLSVTGMSTSVTGVSVGFTLIGTSFTGVSASFTGVSTSFTGASNSLTGVSNSMTGCSSSFTGTSNSMTGSSHSMTGMSTSITGHSMSQTGSSSSITGDSTSFTGSSVSSTGSSVSTTGVSTSTTGSSTSTTGCSVSTTGSSTSTTGNSVSMTGNSTSTTGCSISTTGSSIGTVGSSISTTGSSVSTTGSSISTTGLSVSYTGAQYSDVGVDLKTVGMQSKN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 783 a.a.    

>T6CP002246 NC_009708:c3864392-3862044 [Yersinia pseudotuberculosis IP 31758] [TssI]
MQLIEIENEVLSGQDAFPLSFKTQEKVSGNPSYQLVFQVAEADLDLVSLLGEIIKVRIELPDSAGYRTFFTYVIAGADEG
QRQDKFVYSLELSTWTWFLMQNRNCRIFQDLNIIDIIEQVFSKYNFADYRFDIVGNYRLREYCVQFAETDFDFVNRLMED
EGVWYYFEHNEDKHTLVMTDQQQFPVLEGHYAELSFLPDSEEMRAIREGIQRIQRSQRIHSSEIVLRDFDFLNPRNTLQT
HIEESRQHLQGVPLEWYDYAAGYTDPQHGESIARLRLEAIQSNGQLLSGESNATGLVPGRSFALVQHPDNNRNRGFKLIS
CDYSFVQDGPDSASQGRNVACKFKALNDDVVYRPQCVTPPPKVPGVQSATVVGARESEVHTDKFARIRVHFHWDRYKTTE
DDSSCWIRVVQAWAGKGWGVLAMPRVGQEVLVNYVDGDLDRPMVTGIVYNGENPPPYRLPDHINYSGFVSRSLRFGQPQH
ASQLTFDDNRGNERIMLHAERDLQRTVERNSATAVGQDKYDTVERTATEWINNHISYKDFSFSVTGMSVSATGISVSTTG
TSLSVTGMSTSVTGVSVGFTLIGTSFTGVSASFTGVSTSFTGASNSLTGVSNSMTGCSSSFTGTSNSMTGSSHSMTGMST
SITGHSMSQTGSSSSITGDSTSFTGSSVSSTGSSVSTTGVSTSTTGSSTSTTGCSVSTTGSSTSTTGNSVSMTGNSTSTT
GCSISTTGSSIGTVGSSISTTGSSVSTTGSSISTTGLSVSYTGAQYSDVGVDLKTVGMQSKN*

  Nucleotide sequence: 2349 bp    

>T6CP002246 NC_009708:c3864392-3862044 [Yersinia pseudotuberculosis IP 31758] [TssI]
ATGCAATTAATTGAGATAGAGAATGAGGTTTTATCGGGCCAGGATGCTTTTCCTCTCTCCTTCAAGACGCAGGAAAAAGT
GTCAGGGAATCCATCCTACCAACTGGTATTTCAGGTAGCAGAAGCGGACCTCGATCTGGTCAGTTTGCTGGGGGAAATCA
TCAAAGTCAGGATTGAGTTACCTGACTCAGCCGGCTACCGGACCTTTTTTACCTATGTGATCGCCGGTGCTGATGAAGGG
CAACGGCAAGACAAATTTGTTTACAGCCTGGAACTGAGTACCTGGACGTGGTTTTTGATGCAAAACCGCAACTGCCGGAT
ATTTCAGGACCTGAATATTATCGATATTATCGAACAGGTATTTTCCAAATATAACTTTGCGGATTACCGTTTTGATATTG
TCGGTAACTATCGGTTACGCGAGTACTGCGTACAGTTTGCAGAAACCGATTTCGACTTTGTTAATCGTCTGATGGAAGAC
GAAGGCGTTTGGTATTACTTCGAACATAACGAAGATAAGCACACGCTGGTCATGACAGATCAGCAACAATTCCCTGTATT
GGAAGGGCATTATGCAGAACTGAGTTTCCTGCCTGACAGTGAAGAGATGCGCGCCATCCGTGAGGGGATACAGCGTATTC
AACGCTCACAACGCATCCACTCCAGCGAAATTGTCTTACGTGACTTCGATTTCCTTAATCCACGCAATACATTACAAACC
CATATCGAAGAAAGCCGCCAACACCTGCAAGGCGTACCACTGGAATGGTATGACTACGCGGCGGGTTACACCGATCCCCA
GCATGGTGAGAGCATCGCCCGTTTACGCCTTGAAGCTATACAGAGTAATGGGCAGCTCTTGTCTGGTGAAAGTAATGCCA
CAGGATTAGTGCCAGGGCGCTCTTTTGCTCTGGTACAGCACCCTGATAACAACCGTAATCGGGGATTCAAACTGATCAGT
TGTGACTACAGTTTTGTCCAGGATGGGCCGGACAGTGCGAGCCAGGGACGTAATGTCGCCTGTAAGTTTAAGGCATTGAA
TGATGACGTCGTTTATCGTCCACAATGTGTCACGCCACCGCCAAAGGTCCCTGGTGTGCAAAGTGCCACAGTGGTCGGTG
CGCGTGAATCAGAAGTGCATACCGATAAGTTCGCCCGTATTCGCGTTCACTTTCACTGGGATCGTTATAAAACCACCGAA
GATGATAGCTCCTGCTGGATCCGCGTTGTACAGGCGTGGGCCGGTAAAGGCTGGGGCGTCCTGGCGATGCCTCGGGTCGG
GCAAGAAGTGCTGGTCAATTACGTTGACGGCGATCTTGATCGCCCGATGGTGACCGGGATCGTCTACAACGGTGAGAACC
CACCGCCTTACCGTTTACCTGACCACATTAACTACTCCGGTTTTGTCTCACGCTCACTGCGCTTTGGTCAGCCACAACAC
GCCAGCCAGCTTACCTTCGATGATAATCGGGGCAATGAGCGGATCATGCTACATGCTGAGCGCGACTTACAAAGAACGGT
TGAACGTAACAGTGCGACGGCCGTCGGTCAGGATAAATACGACACGGTGGAACGGACGGCCACGGAGTGGATCAACAACC
ATATCTCCTACAAAGACTTCAGTTTCTCGGTGACTGGCATGAGTGTCTCCGCGACGGGCATCAGTGTCTCGACAACGGGA
ACGAGCTTATCTGTCACCGGCATGAGCACCAGCGTTACGGGTGTCAGTGTCGGTTTCACCTTGATAGGGACCTCTTTTAC
TGGCGTGAGCGCGTCGTTTACTGGTGTCAGTACCTCTTTCACCGGGGCCAGCAACTCGCTAACCGGTGTCAGCAACTCGA
TGACCGGGTGTAGTTCCTCCTTTACCGGTACTAGCAATAGCATGACAGGCAGTAGCCATAGCATGACCGGCATGAGCACC
AGCATCACCGGGCATAGCATGAGTCAGACGGGTTCCAGTAGCAGCATCACCGGTGACAGTACCTCCTTTACCGGCAGCAG
CGTCAGCAGTACGGGCAGCAGCGTCAGTACGACCGGTGTTAGCACCAGCACTACGGGGAGTAGCACCTCGACTACCGGTT
GTAGCGTCAGTACTACGGGTAGCAGCACCTCGACTACCGGTAATTCAGTCAGCATGACCGGTAACAGCACCAGTACCACG
GGATGCAGTATTTCCACGACGGGCAGCAGTATTGGGACGGTAGGAAGCAGTATCAGCACCACGGGCAGTAGCGTCAGTAC
CACCGGTAGCAGTATCAGCACCACGGGATTATCCGTCAGTTATACCGGCGCTCAATATTCCGATGTGGGTGTCGATCTGA
AAACCGTTGGCATGCAAAGCAAAAACTGA