Detailed information of component protein
Summary
Component ID | T6CP002244 |
Component protein type | TssK |
T6SS ID (Type) | T6SS00225 (Type i3) |
Strain | Yersinia pseudotuberculosis IP 31758 |
Replicon | chromosome |
Sequence | Protein sequence (452 a.a.); Nucleotide sequence (1356 bp) |
Reference |
External database links
Locus tag (Gene) | YPSIP31758_RS18445 |
Coordinate (Strand) | 3855743..3857098 (-) |
NCBI ID | WP_002210470.1 |
RefSeq | NC_009708 |
Uniprot ID | A0A0E8XIW6_9GAMM, Q66EN8_YERPS, A0A0U1R2F9_YERP3, A0A0E1NLS2_YERPA, A0A0H2YDU8_YERPN, A0A0H3B5M5_YERPY, A0A5P8YL23_YERPE, A0A3G5IS42_YERPU |
KEGG ID | ypn:YPN_0388, ypc:BZ23_130, ypu:BZ21_4036, ypq:DJ40_1715, ypr:BZ20_1441, ypa:YPA_3582, ype:YPO0513, ypi:YpsIP31758_3423, ypo:BZ17_1903, ypy:YPK_3552, yps:YPTB0654 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VasE | PF05936.14 | 7.7e-119 | 19..444 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-451 | MLPKQRVAWVEGMLMEPQHFQQQERYLEHLTEMRARSLSALAWGFHSLSINQGLLDQGKIALNQASGVFPDGTPFHMAGDEPLPLPFDPGENCQGSVVCLSVLMDIPGNTYIDLKKSNQGSRFVALDAEVQDRNHGVAAEGTPLIATLQLGQLQSKLTLRASVSDAESMLPVAYIKERTRDGRLILDDNFLPPMLDFRAIGWIDNAVTELLGLIVQRLESVYRPDVTLSVGGLSELLELLLLQTLSEYNLKISHVLMQKQVHPEQLFQLLLGLLGRLSTIPGGEKPWSRQDLLYTHHEPHNGYFSLFAALRRALSLVIEAPAVALPFIERGDNIYLCQNDSQLRLEKLIFTVSSKLPSETIRTYFPAQTKLGPVEKIVQLIDLQLPGARMIPMSSPPRYIPYYPNSVYFEVDHDDPMYKEMMSGSAIALSIVGDFPELRFEVWGLRQGRLG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9826 | - | - |
Protein sequence: 452 a.a.
>T6CP002244 NC_009708:c3857098-3855743 [Yersinia pseudotuberculosis IP 31758] [TssK]
MLPKQRVAWVEGMLMEPQHFQQQERYLEHLTEMRARSLSALAWGFHSLSINQGLLDQGKIALNQASGVFPDGTPFHMAGD
EPLPLPFDPGENCQGSVVCLSVLMDIPGNTYIDLKKSNQGSRFVALDAEVQDRNHGVAAEGTPLIATLQLGQLQSKLTLR
ASVSDAESMLPVAYIKERTRDGRLILDDNFLPPMLDFRAIGWIDNAVTELLGLIVQRLESVYRPDVTLSVGGLSELLELL
LLQTLSEYNLKISHVLMQKQVHPEQLFQLLLGLLGRLSTIPGGEKPWSRQDLLYTHHEPHNGYFSLFAALRRALSLVIEA
PAVALPFIERGDNIYLCQNDSQLRLEKLIFTVSSKLPSETIRTYFPAQTKLGPVEKIVQLIDLQLPGARMIPMSSPPRYI
PYYPNSVYFEVDHDDPMYKEMMSGSAIALSIVGDFPELRFEVWGLRQGRLG*
MLPKQRVAWVEGMLMEPQHFQQQERYLEHLTEMRARSLSALAWGFHSLSINQGLLDQGKIALNQASGVFPDGTPFHMAGD
EPLPLPFDPGENCQGSVVCLSVLMDIPGNTYIDLKKSNQGSRFVALDAEVQDRNHGVAAEGTPLIATLQLGQLQSKLTLR
ASVSDAESMLPVAYIKERTRDGRLILDDNFLPPMLDFRAIGWIDNAVTELLGLIVQRLESVYRPDVTLSVGGLSELLELL
LLQTLSEYNLKISHVLMQKQVHPEQLFQLLLGLLGRLSTIPGGEKPWSRQDLLYTHHEPHNGYFSLFAALRRALSLVIEA
PAVALPFIERGDNIYLCQNDSQLRLEKLIFTVSSKLPSETIRTYFPAQTKLGPVEKIVQLIDLQLPGARMIPMSSPPRYI
PYYPNSVYFEVDHDDPMYKEMMSGSAIALSIVGDFPELRFEVWGLRQGRLG*
Nucleotide sequence: 1356 bp
>T6CP002244 NC_009708:c3857098-3855743 [Yersinia pseudotuberculosis IP 31758] [TssK]
ATGCTGCCAAAACAACGTGTTGCTTGGGTGGAAGGGATGCTGATGGAACCCCAGCATTTTCAACAACAGGAACGATATCT
AGAACATTTAACTGAAATGCGGGCACGTAGCCTCAGCGCGCTGGCATGGGGCTTCCATAGCCTAAGTATCAATCAAGGGC
TGCTGGATCAGGGCAAGATCGCCCTCAATCAGGCCAGTGGTGTTTTCCCTGACGGTACACCTTTTCATATGGCGGGTGAT
GAGCCATTACCGCTACCTTTTGATCCGGGGGAGAACTGCCAAGGCAGTGTCGTGTGCCTTTCGGTCCTGATGGATATACC
CGGCAATACCTATATTGATCTGAAGAAGAGCAACCAAGGTAGCCGTTTCGTTGCGCTGGATGCTGAAGTTCAAGACAGAA
ACCATGGCGTCGCTGCTGAAGGAACGCCATTGATCGCCACCCTTCAACTGGGGCAATTGCAATCCAAGCTCACCTTACGT
GCCAGCGTCAGTGATGCAGAATCGATGCTGCCCGTAGCCTATATCAAAGAGCGCACCCGCGATGGGCGTCTGATTCTGGA
TGATAACTTCCTGCCACCCATGTTGGATTTTCGCGCCATAGGGTGGATCGATAATGCGGTAACCGAATTGCTAGGGTTGA
TCGTTCAGCGACTGGAATCGGTTTACCGGCCAGATGTGACGCTCTCAGTCGGTGGGTTATCGGAGTTACTGGAACTGCTA
TTACTGCAAACACTCAGTGAATATAACCTAAAGATTTCACATGTGTTGATGCAAAAACAGGTACACCCTGAGCAGTTGTT
CCAATTATTGCTTGGGTTGTTGGGGCGTCTCAGTACTATCCCTGGCGGAGAAAAACCGTGGTCGAGGCAGGATCTGCTCT
ATACGCATCATGAACCGCACAACGGGTATTTCTCGCTGTTTGCCGCCTTACGGCGCGCACTCTCACTGGTGATCGAAGCA
CCGGCAGTGGCGCTACCGTTTATCGAACGTGGCGACAATATTTACCTGTGCCAGAACGATTCACAACTGCGTCTGGAAAA
ACTGATCTTCACCGTCAGTTCCAAACTGCCTTCCGAGACCATTCGCACTTACTTCCCGGCGCAAACCAAACTGGGGCCGG
TGGAGAAAATTGTACAGTTGATCGACCTGCAATTGCCTGGCGCACGGATGATCCCGATGTCATCACCGCCAAGATATATT
CCTTATTACCCGAATAGCGTCTATTTCGAAGTTGACCATGATGATCCTATGTATAAAGAAATGATGTCTGGTTCAGCTAT
CGCACTCAGCATCGTGGGTGATTTCCCTGAGTTGCGTTTTGAAGTATGGGGCTTGCGACAAGGAAGGCTCGGATGA
ATGCTGCCAAAACAACGTGTTGCTTGGGTGGAAGGGATGCTGATGGAACCCCAGCATTTTCAACAACAGGAACGATATCT
AGAACATTTAACTGAAATGCGGGCACGTAGCCTCAGCGCGCTGGCATGGGGCTTCCATAGCCTAAGTATCAATCAAGGGC
TGCTGGATCAGGGCAAGATCGCCCTCAATCAGGCCAGTGGTGTTTTCCCTGACGGTACACCTTTTCATATGGCGGGTGAT
GAGCCATTACCGCTACCTTTTGATCCGGGGGAGAACTGCCAAGGCAGTGTCGTGTGCCTTTCGGTCCTGATGGATATACC
CGGCAATACCTATATTGATCTGAAGAAGAGCAACCAAGGTAGCCGTTTCGTTGCGCTGGATGCTGAAGTTCAAGACAGAA
ACCATGGCGTCGCTGCTGAAGGAACGCCATTGATCGCCACCCTTCAACTGGGGCAATTGCAATCCAAGCTCACCTTACGT
GCCAGCGTCAGTGATGCAGAATCGATGCTGCCCGTAGCCTATATCAAAGAGCGCACCCGCGATGGGCGTCTGATTCTGGA
TGATAACTTCCTGCCACCCATGTTGGATTTTCGCGCCATAGGGTGGATCGATAATGCGGTAACCGAATTGCTAGGGTTGA
TCGTTCAGCGACTGGAATCGGTTTACCGGCCAGATGTGACGCTCTCAGTCGGTGGGTTATCGGAGTTACTGGAACTGCTA
TTACTGCAAACACTCAGTGAATATAACCTAAAGATTTCACATGTGTTGATGCAAAAACAGGTACACCCTGAGCAGTTGTT
CCAATTATTGCTTGGGTTGTTGGGGCGTCTCAGTACTATCCCTGGCGGAGAAAAACCGTGGTCGAGGCAGGATCTGCTCT
ATACGCATCATGAACCGCACAACGGGTATTTCTCGCTGTTTGCCGCCTTACGGCGCGCACTCTCACTGGTGATCGAAGCA
CCGGCAGTGGCGCTACCGTTTATCGAACGTGGCGACAATATTTACCTGTGCCAGAACGATTCACAACTGCGTCTGGAAAA
ACTGATCTTCACCGTCAGTTCCAAACTGCCTTCCGAGACCATTCGCACTTACTTCCCGGCGCAAACCAAACTGGGGCCGG
TGGAGAAAATTGTACAGTTGATCGACCTGCAATTGCCTGGCGCACGGATGATCCCGATGTCATCACCGCCAAGATATATT
CCTTATTACCCGAATAGCGTCTATTTCGAAGTTGACCATGATGATCCTATGTATAAAGAAATGATGTCTGGTTCAGCTAT
CGCACTCAGCATCGTGGGTGATTTCCCTGAGTTGCGTTTTGAAGTATGGGGCTTGCGACAAGGAAGGCTCGGATGA