Detailed information of component protein


Summary

Component ID T6CP002243
Component protein type TssL
T6SS ID (Type) T6SS00225 experimental (Type i3)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (537 a.a.); Nucleotide sequence (1611 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS18440
Coordinate (Strand) 3854136..3855746 (-)
NCBI ID WP_011191718.1
RefSeq NC_009708
Uniprot ID Q66EN7_YERPS, A0A0U1R1H8_YERP3
KEGG ID ypo:BZ17_1902, yps:YPTB0655, ypi:YpsIP31758_3422
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.6e-42 145..336
OmpA PF00691.22 8e-10 398..501
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-315 MNEFERQIRAAISAARNGAKHAEQSLTTPMWQAKSTVASLGGIVPRSGSSSTSQAENYKEDLADQAASGNNMARTSAPPVTLYQQQPNANDSYPNGNNNNPNGDNNNPNGSNNNIARVQRMPHGISRGLYERPGMLLGAWDNAYIAAAMPLLLLVENIRSWPTRNAAEVRPPIVRELQYFQQHLQKKNYPQEDINHLSYLLCTYIDGIFNGLQTPDSYNQSLLVEFHRDAWGGEDCFEHLRVYMNSPKQYREVLEFYDLIMCLGFDGKYQMIEHGAVLLMDLRSRLHTQLYGQDATQSLAIAQAVKGSPRRQYIK
Transmembrane helix 316-338 ALKIFTYGFALCLCAYGVTAWYL
Outside 339-536 HQQSQQIRSNILTWVLPEPRKINIMETLPNPLSNILNEGWLEVRKDPRGWLLIFTSDGAFRTGEATLSEEFINKKNIERLGLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREISAIGRGESDPLADNATEEGRKRNRRVDILWKIGQRDADKAMKQFLENPTPEVQGTNTQQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6870 - -


  Protein sequence: 537 a.a.    

>T6CP002243 NC_009708:c3855746-3854136 [Yersinia pseudotuberculosis IP 31758] [TssL]
MNEFERQIRAAISAARNGAKHAEQSLTTPMWQAKSTVASLGGIVPRSGSSSTSQAENYKEDLADQAASGNNMARTSAPPV
TLYQQQPNANDSYPNGNNNNPNGDNNNPNGSNNNIARVQRMPHGISRGLYERPGMLLGAWDNAYIAAAMPLLLLVENIRS
WPTRNAAEVRPPIVRELQYFQQHLQKKNYPQEDINHLSYLLCTYIDGIFNGLQTPDSYNQSLLVEFHRDAWGGEDCFEHL
RVYMNSPKQYREVLEFYDLIMCLGFDGKYQMIEHGAVLLMDLRSRLHTQLYGQDATQSLAIAQAVKGSPRRQYIKALKIF
TYGFALCLCAYGVTAWYLHQQSQQIRSNILTWVLPEPRKINIMETLPNPLSNILNEGWLEVRKDPRGWLLIFTSDGAFRT
GEATLSEEFINKKNIERLGLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREISAI
GRGESDPLADNATEEGRKRNRRVDILWKIGQRDADKAMKQFLENPTPEVQGTNTQQ*

  Nucleotide sequence: 1611 bp    

>T6CP002243 NC_009708:c3855746-3854136 [Yersinia pseudotuberculosis IP 31758] [TssL]
ATGAACGAATTTGAACGCCAGATCCGTGCAGCCATTTCCGCAGCACGCAATGGCGCAAAACATGCGGAACAGTCACTGAC
TACACCAATGTGGCAAGCCAAAAGCACCGTAGCCTCATTGGGTGGGATTGTCCCTAGAAGTGGCTCTTCGTCAACGTCAC
AGGCGGAGAACTATAAGGAAGATCTCGCGGACCAGGCTGCCTCGGGCAACAACATGGCGCGCACGAGTGCGCCACCGGTC
ACTTTGTATCAGCAACAGCCAAATGCGAATGACAGCTATCCAAACGGGAATAACAACAATCCAAACGGGGATAACAACAA
TCCAAACGGGAGTAACAACAATATAGCGAGAGTACAGCGTATGCCGCATGGCATTTCCAGGGGCTTATATGAGCGCCCTG
GGATGTTATTGGGTGCCTGGGATAACGCCTATATTGCTGCGGCTATGCCTTTGCTGCTGCTGGTGGAAAATATTCGTAGC
TGGCCGACGCGTAACGCCGCAGAGGTCAGGCCACCGATTGTGCGGGAATTACAATATTTCCAGCAACATTTGCAGAAAAA
GAACTACCCGCAAGAAGACATTAACCACCTGTCTTACCTGCTATGTACCTATATCGATGGCATTTTTAACGGGCTGCAAA
CCCCAGACTCCTACAACCAAAGTCTGTTAGTGGAGTTTCATCGTGATGCCTGGGGGGGTGAGGACTGCTTCGAACATCTG
CGGGTCTATATGAACTCGCCGAAACAGTACCGGGAAGTTCTGGAATTCTATGATCTGATTATGTGCCTTGGTTTTGACGG
TAAATACCAGATGATAGAGCATGGTGCGGTTCTGCTGATGGATTTACGCAGCCGTCTCCACACGCAACTCTACGGTCAGG
ACGCCACACAATCTTTGGCTATCGCGCAAGCGGTCAAAGGTTCTCCGCGTCGCCAATATATCAAGGCGCTGAAAATCTTC
ACCTATGGTTTCGCACTGTGCCTTTGTGCTTACGGCGTCACGGCGTGGTATCTGCACCAGCAATCCCAACAGATCCGCAG
CAACATTCTGACGTGGGTACTGCCTGAACCGCGGAAAATCAACATCATGGAGACCTTGCCGAATCCGCTATCCAACATCC
TGAATGAAGGGTGGCTGGAGGTCAGGAAAGATCCGCGTGGATGGCTATTAATCTTCACCTCCGACGGCGCGTTCCGCACG
GGTGAAGCGACCCTCTCGGAAGAGTTTATCAACAAGAAGAATATCGAACGTCTTGGGCTGGCATTAGCCCCATGGCCGGG
AGATATCGAGGTTATTGGTCATACGGATAACAAACCGTTCCGTAGCACTTCCGGTAACAACAACCTCAAACTTTCCGCGG
CCAGAGCATCGGTGGTGGCAGATAAACTGCGGGAATCCACTCAAATCAACGAAACCCATCAGCGAGAAATAAGTGCCATC
GGACGGGGGGAGAGCGATCCTTTAGCTGACAATGCAACGGAAGAAGGGCGCAAGCGTAACCGGCGTGTGGATATCCTATG
GAAAATTGGTCAGCGCGATGCCGATAAGGCCATGAAGCAATTCCTGGAGAACCCAACACCAGAAGTTCAAGGAACGAATA
CCCAACAATAG