SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP002159
Component protein type	TssI
T6SS ID (Type)	T6SS00216 (Type i1)
Strain	Marinomonas sp. MWYL1
Replicon	chromosome
Sequence	Protein sequence (700 a.a.); Nucleotide sequence (2100 bp)
Reference	[1] Bernard CS, Brunet YR, Gavioli M, et al. Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins. J Bacteriol. 2011 May;193(9):2158-67. doi: 10.1128/JB.00029-11. Epub 2011 Mar 4. PMID: 21378190

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	MMWYL1_RS06145
Coordinate (Strand)	1357553..1359652 (+)
NCBI ID	WP_012068926.1
RefSeq	NC_009654
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
Phage_GPD	PF05954.13	1.3e-73	42..335
Phage_base_V	PF04717.14	5.5e-14	393..458

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 700 a.a.

						>T6CP002159 NC_009654:1357553-1359652 [Marinomonas sp. MWYL1] [TssI]
MATLTFTLALDGMEDNTLLVREYQGHESLSDSLLKDGSPCYGFRYQLALASRQSDLSADTIVDKNAELRVFRNGELIQRV
HGIVCHFEKGDTGHHFTYYGLTLVPALERLSLRHNSRIFQKQTAQDIISQLLNEMGITEHLFDTQRTPLEREFCAQYRES
DLDFVHRLAAEEGWVYYFTHEEGKHQLHFADQSQFLPKHPTPIPYNVLSGGGSDDQYIATLTHHTQSLPSQAVLKDYSFK
KPDYRFLHQEDGENLYYQLPNYEHYDAPGRFKDDVTGKAFSRIRLEYLRRSARTLVGESNHAAIQAGLKITIEGHSEDSI
NQEWLPVSVEHHGTQPQVLEEEGQSGSTNYHNRFTFIPATTNWQATPQPKPSVDGPMMAIVVGPEGEEIFCDEHGRIKLH
FPWDRYSEANDHSSCWVRVSQGWAGNQHGMMAIPRIGSEVIVSFLNGDPDQPIVTGRTFNAKNTPPYLLPDNKTKTVWRS
DTHQGEGFNEISFEDQVDNEKVYIHAQKDMETDVLNDRITHIGHDQHGQIDNDRFTQIGGENGTGNDHLTIKGESRHKID
KDHTLMVDGSLQQKVGSKAVLDAGNEVHLSSGVKLVVDAGAELTLTAGGSFVKIDGSGVHLVGSAINLNSGGSAGSGSGF
GGAQAETPLNVVSPEYDANLEAPEGNEAPVVPVQQKQAIVTAAEQGTPICQACEEAATE*					

Nucleotide sequence: 2100 bp

						>T6CP002159 NC_009654:1357553-1359652 [Marinomonas sp. MWYL1] [TssI]
ATGGCTACATTGACGTTTACACTGGCACTCGACGGCATGGAAGACAACACTCTGCTTGTCCGAGAATACCAAGGGCACGA
ATCGCTCTCCGATTCCCTGCTAAAAGACGGCTCGCCTTGTTATGGCTTCCGTTACCAATTGGCCCTCGCCAGCCGTCAAT
CGGATCTGTCTGCTGATACCATCGTCGATAAAAACGCCGAGCTACGCGTGTTTCGTAACGGCGAACTGATTCAACGAGTG
CACGGCATTGTTTGCCACTTTGAAAAAGGCGACACCGGACACCACTTTACCTACTATGGCTTAACCTTGGTTCCGGCATT
GGAACGCTTATCGCTACGTCACAACAGCCGTATCTTCCAAAAGCAAACCGCGCAAGACATCATCAGCCAATTGCTGAATG
AAATGGGCATCACCGAACACCTGTTTGATACCCAACGTACACCGCTTGAGCGCGAGTTCTGTGCCCAGTACCGAGAAAGT
GACTTAGATTTTGTCCACCGTTTGGCGGCCGAAGAAGGCTGGGTCTACTACTTCACCCACGAAGAAGGCAAACACCAACT
GCACTTTGCAGATCAAAGCCAGTTTTTACCCAAACACCCAACCCCGATTCCGTACAACGTCTTATCAGGTGGGGGCTCAG
ACGATCAATACATCGCCACCCTGACGCACCATACACAAAGCTTGCCTAGCCAAGCTGTGCTCAAAGACTACAGCTTCAAA
AAGCCCGACTACCGCTTCTTGCACCAAGAAGACGGCGAGAACCTATATTACCAGCTGCCAAACTACGAACACTACGATGC
CCCTGGGCGTTTTAAAGACGACGTTACAGGCAAAGCCTTTTCACGTATCCGTCTAGAATATCTACGTCGCAGTGCGCGAA
CCTTAGTAGGAGAAAGCAACCACGCCGCCATCCAAGCGGGCCTAAAAATCACCATCGAAGGCCACAGCGAAGACAGCATC
AACCAAGAATGGCTGCCCGTCTCGGTTGAACATCACGGCACCCAGCCGCAAGTCTTGGAAGAAGAAGGCCAATCTGGCAG
CACAAACTACCACAACCGGTTTACCTTCATCCCAGCCACCACCAACTGGCAAGCGACACCGCAACCCAAACCCAGTGTCG
ATGGCCCCATGATGGCCATTGTAGTGGGACCCGAAGGGGAAGAAATCTTCTGTGATGAACACGGACGCATCAAACTGCAC
TTCCCATGGGACCGATACAGCGAAGCCAACGACCACAGCTCCTGCTGGGTACGTGTCTCCCAAGGCTGGGCTGGCAACCA
ACATGGCATGATGGCGATCCCAAGAATCGGCAGCGAAGTCATCGTCAGCTTTTTAAATGGCGACCCCGATCAACCGATCG
TGACCGGACGTACCTTTAACGCCAAAAACACCCCGCCGTACCTTCTACCGGACAATAAAACCAAAACCGTCTGGCGCAGC
GATACCCACCAGGGTGAAGGCTTCAACGAGATCAGCTTCGAAGACCAAGTCGACAACGAAAAAGTCTACATCCACGCGCA
AAAAGACATGGAAACCGATGTACTTAACGACCGCATCACCCACATCGGCCACGACCAACACGGACAAATCGACAACGACC
GCTTCACCCAAATCGGCGGAGAAAACGGCACAGGCAATGACCACCTGACCATCAAAGGCGAAAGTCGTCACAAGATAGAT
AAAGATCACACGCTGATGGTAGACGGAAGTCTGCAACAGAAAGTTGGCTCGAAAGCCGTACTGGATGCAGGCAACGAAGT
ACATCTAAGCAGCGGTGTGAAACTGGTCGTTGATGCAGGCGCCGAACTCACCTTAACGGCAGGGGGCAGCTTCGTAAAAA
TAGATGGCTCAGGCGTACACCTCGTCGGCTCGGCCATCAATCTAAACTCCGGCGGCAGCGCAGGATCGGGCAGTGGCTTT
GGCGGGGCACAAGCGGAAACACCGCTAAATGTGGTTTCACCTGAGTACGACGCTAACCTTGAAGCGCCTGAGGGGAATGA
GGCACCGGTTGTTCCGGTTCAGCAAAAACAAGCCATAGTCACCGCCGCAGAGCAGGGCACTCCTATTTGTCAGGCTTGTG
AAGAGGCGGCAACAGAATGA					