Detailed information of component protein


Summary

Component ID T6CP002158
Component protein type TssM
T6SS ID (Type) T6SS00216 insolico (Type i1)
Strain Marinomonas sp. MWYL1
Replicon chromosome
Sequence Protein sequence (1183 a.a.); Nucleotide sequence (3549 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) MMWYL1_RS06130
Coordinate (Strand) 1352337..1355885 (+)
NCBI ID WP_012068924.1
RefSeq NC_009654
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 8.7e-74 205..460
IcmF-related PF06761.14 6.4e-69 512..826
IcmF_C PF06744.14 8.1e-22 1056..1161
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1183 a.a.    

>T6CP002158 NC_009654:1352337-1355885 [Marinomonas sp. MWYL1] [TssM]
MFKPLVGLLKKLVPSLVAALPFLTLLIVILINLAIWLTGPWLIINEEAPLASISARLLTMVIFSLACLAAWGLFQWRKLN
AYHAELQREEELREDPVKAAEENQEAELNKVMTNMQESLNKRNYLYALPWYLVMGLENAGKTSLINRSGQDFTFSSILKS
SGEGSKNAYSFDWWVGDTSVLIDPDGELLTQGKNVSDPTSDGVMEKRLWEHFIHWLERTRSRRPLNGIVLALDVSKLATS
TIYERKAFATILRSRIRELMETLSTRLPVYVTLTKLDLLYGFEPFFKNYTKEQREEVLGFTFSLSSVDDHDNWMKEFDAE
YEEFISRVNAILPHIVAKNISDEDRNAVYSFTRQISGLKDILSVFFQDALSSDQFSTSALVRGVYFTSVYQQGVPTNAFD
DASSRRYGLTHAINSAQNAKNSTMYFTKNLFNNIIYPEAGLASDNFRVSKQKKRIMLLSTVSCSIISLILIGSWHRYYLK
NIEQADAVLSKVNLYMEEYPADMDLVSQNEILPPLNTIRDATLEFGFFRDKPRYISDLGLYQGHAIGPQVEMTYLNLLEY
RYLPSLMLELVADLKSADTDENKLSILRVYRMLVDKNGRYDEFVLNYFSRKWQVKYSGNKAIQDKLLQHLAYALQHTDLY
GARLAGDENADKVLRPYDKLIATTQDGLSSLAIDERVYRNLKLSAQTALGADLNIRTLVGPSFNLVFDEREIGSDKLNVP
KVLTKEGFKSYFLPQSESVSDLALIDSWVLGQTETAQFSKADKQALKEKIRDSYVSDYTNTWRNVLNEIDIKNFSNISEA
VDVLDNLTGNGKPLQRLLAALRDNTKLYPEIPEDGEAREEMLKSASYNLASRLNAPFAELNRIVESNDGQPAYIDELLLS
IEQLRTYLAAIQDAPDMGRAALETTKSRASLNSVDPIYTLSRVATGLPKPLDSMMSKLADESWYVIKQEAIRYLEVRWHD
DIYKVYEQKFAGRYPFDPSSSRDVSLQDFEAFFAPDGILDRFYNDQLKMFIDENSNINGGHHGKSLIRKDVLKQLGKAKL
IQEAFFNRKGILDVSFGVEPILLSANKRRGVLNIDGQYLSYSHGPRNNVEVIWPNTLRDNTTSKLTLVPTEANESPRSIS
TEGPWSLYRLLDTAKVVGASDSSVTYQFTVDNGYMEVKVNATTSNPFTQRLFKNFELSKTLY*

  Nucleotide sequence: 3549 bp    

>T6CP002158 NC_009654:1352337-1355885 [Marinomonas sp. MWYL1] [TssM]
ATGTTCAAACCTTTAGTTGGCCTATTAAAAAAACTCGTACCCAGCCTTGTGGCGGCGCTGCCGTTTTTAACCTTACTAAT
AGTCATCCTAATCAACCTTGCTATTTGGTTGACAGGGCCGTGGCTAATCATAAACGAAGAGGCGCCATTGGCGTCTATTA
GTGCTCGTTTATTGACTATGGTTATTTTCTCTCTTGCCTGTTTGGCGGCTTGGGGACTATTTCAGTGGCGTAAGCTCAAT
GCTTATCACGCAGAACTTCAACGTGAAGAAGAGCTGCGAGAAGACCCTGTAAAAGCGGCCGAAGAAAACCAAGAGGCCGA
ATTAAATAAAGTCATGACTAACATGCAAGAAAGCCTTAATAAGCGTAACTACCTTTATGCTTTGCCTTGGTATCTTGTCA
TGGGGCTTGAAAATGCCGGTAAAACCAGCCTAATTAACCGCTCTGGTCAGGATTTTACTTTCTCCTCCATTCTAAAATCT
TCCGGAGAGGGCAGTAAAAACGCCTATTCTTTTGATTGGTGGGTTGGTGATACTTCTGTATTGATTGATCCAGATGGCGA
GTTATTGACGCAAGGCAAGAATGTTTCTGATCCAACTAGCGATGGCGTGATGGAAAAACGCCTATGGGAACATTTTATAC
ATTGGCTTGAACGAACTCGTAGTCGCCGCCCGCTGAACGGTATTGTATTAGCGCTTGATGTATCGAAATTAGCGACTTCA
ACTATTTATGAAAGAAAAGCATTTGCGACTATTTTAAGGTCTCGAATCCGTGAGCTTATGGAAACCTTGTCCACTCGCTT
GCCTGTGTATGTGACCTTAACCAAGTTAGATTTGCTCTATGGTTTTGAACCATTCTTTAAAAATTACACGAAAGAACAGC
GTGAAGAGGTACTTGGTTTTACCTTCTCGCTTTCCTCTGTTGATGACCATGATAACTGGATGAAGGAGTTTGATGCGGAA
TACGAAGAGTTTATTAGCCGCGTTAATGCCATATTGCCCCACATAGTCGCTAAGAACATTAGTGATGAAGATCGTAATGC
TGTGTACAGCTTCACAAGACAAATCAGTGGTTTAAAAGACATACTGTCAGTATTTTTCCAAGATGCGTTAAGTAGCGACC
AATTCTCTACTTCAGCATTGGTACGTGGAGTGTACTTTACGTCTGTTTATCAGCAAGGTGTTCCAACTAACGCCTTTGAT
GATGCCTCGTCACGACGTTATGGTCTGACTCATGCCATAAACAGTGCTCAAAATGCCAAAAACTCGACCATGTACTTCAC
CAAGAATTTGTTTAATAACATTATTTATCCAGAAGCGGGTTTGGCATCGGATAACTTCCGAGTGAGTAAGCAGAAAAAAC
GCATTATGCTCTTGAGCACAGTGTCTTGTTCCATCATCTCTTTGATTCTGATCGGATCATGGCACCGTTATTATTTAAAG
AATATTGAGCAAGCGGATGCGGTATTGAGCAAGGTTAACTTGTACATGGAAGAGTATCCTGCGGATATGGACTTGGTGTC
TCAGAATGAGATCTTACCGCCGTTGAATACCATTCGTGATGCGACTTTAGAGTTTGGTTTTTTCCGTGATAAGCCAAGAT
ACATTTCAGATTTAGGTTTATATCAAGGGCATGCCATTGGTCCTCAAGTCGAAATGACGTATCTGAATCTGTTGGAGTAC
CGCTATCTACCTTCTTTAATGTTGGAGCTGGTCGCTGACCTTAAAAGCGCCGATACGGATGAAAATAAGCTTTCAATATT
GAGAGTTTATCGAATGCTGGTGGACAAAAACGGTCGTTATGATGAGTTTGTACTGAATTATTTTTCACGCAAGTGGCAAG
TTAAATATTCCGGAAACAAGGCGATTCAAGACAAGCTTTTACAGCATTTAGCCTACGCGTTGCAGCATACAGATCTCTAT
GGGGCTCGCCTTGCTGGAGATGAAAATGCCGATAAAGTATTGCGACCTTACGATAAGTTAATCGCCACCACCCAAGATGG
TTTAAGCTCTTTGGCGATTGATGAACGTGTTTACAGAAACCTAAAACTGTCAGCGCAAACTGCACTTGGTGCCGATCTTA
ATATTCGTACCTTGGTTGGTCCTTCATTCAATCTAGTTTTCGATGAAAGAGAAATTGGCAGCGATAAACTGAATGTCCCT
AAAGTCTTGACCAAAGAAGGCTTTAAAAGCTATTTCCTACCGCAATCTGAATCCGTGTCTGATTTGGCTTTGATTGACAG
CTGGGTGTTAGGACAAACGGAAACAGCGCAATTCAGTAAAGCTGATAAGCAGGCATTGAAAGAAAAAATTAGAGATTCCT
ATGTCAGTGATTACACGAATACATGGCGAAATGTTTTAAATGAAATTGATATTAAGAACTTCTCTAATATCAGCGAAGCC
GTCGATGTATTGGATAATCTAACCGGCAATGGCAAACCTTTGCAGCGCTTGCTTGCTGCCTTAAGGGATAACACCAAACT
CTATCCTGAAATTCCTGAGGATGGAGAAGCGCGTGAAGAAATGCTGAAAAGTGCTAGCTACAACTTGGCTTCTAGATTGA
ATGCGCCGTTTGCTGAGCTGAACCGTATTGTGGAATCTAACGATGGTCAGCCAGCTTATATTGATGAACTATTGTTATCT
ATTGAGCAATTAAGAACTTATCTTGCTGCAATTCAAGATGCTCCTGATATGGGACGTGCCGCATTAGAGACGACTAAATC
ACGAGCTTCATTGAATAGTGTTGATCCAATTTACACCCTTTCTAGGGTGGCGACAGGGCTTCCAAAACCTCTGGATTCTA
TGATGTCTAAGCTGGCTGATGAAAGTTGGTATGTCATTAAGCAAGAAGCAATTCGTTACTTAGAAGTGAGATGGCATGAC
GACATCTATAAAGTCTATGAGCAGAAATTTGCCGGACGCTATCCGTTTGATCCTAGCTCAAGTCGTGATGTGTCGTTGCA
AGACTTTGAAGCCTTCTTTGCGCCAGACGGCATTTTAGACCGATTCTATAACGATCAGTTAAAAATGTTTATTGATGAAA
ACTCCAATATCAATGGCGGTCATCATGGTAAATCATTGATCCGTAAGGATGTGCTTAAGCAGCTAGGAAAAGCAAAATTA
ATTCAAGAAGCTTTCTTTAATAGAAAAGGCATATTGGATGTTAGCTTCGGCGTGGAGCCGATCCTTTTATCTGCGAATAA
GCGAAGAGGCGTGTTGAATATCGATGGTCAATATTTATCTTACAGTCATGGACCAAGAAATAATGTAGAAGTTATTTGGC
CGAATACGCTAAGAGATAACACCACATCGAAATTGACCTTAGTGCCAACTGAGGCTAACGAGTCACCGCGTAGTATCTCA
ACAGAAGGTCCTTGGTCGCTTTATCGTTTGCTTGATACAGCGAAAGTGGTGGGCGCTAGTGACTCCAGCGTGACTTATCA
ATTTACGGTTGATAATGGCTATATGGAAGTCAAAGTGAATGCAACCACCTCCAATCCGTTTACTCAGCGCTTATTTAAAA
ACTTCGAGCTGTCTAAAACCTTGTATTAA