Detailed information of component protein


Summary

Component ID T6CP002157
Component protein type TssH
T6SS ID (Type) T6SS00216 insolico (Type i1)
Strain Marinomonas sp. MWYL1
Replicon chromosome
Sequence Protein sequence (874 a.a.); Nucleotide sequence (2622 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) MMWYL1_RS06110
Coordinate (Strand) 1346109..1348730 (+)
NCBI ID WP_012068920.1
RefSeq NC_009654
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.8e-37 611..772
AAA_lid_9 PF17871.3 8.9e-26 362..453
ClpB_D2-small PF10431.11 3.8e-11 778..852
AAA PF00004.31 9.7e-09 223..353
Clp_N PF02861.22 5.9e-06 24..73
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 874 a.a.    

>T6CP002157 NC_009654:1346109-1348730 [Marinomonas sp. MWYL1] [TssH]
VIRIELSTLISKLNSQSKLALEQAAALCIERQHHEVSIEHFLSVLLENPMSDVCVIFDHVKLGKDDIQAAISKSYPRSTT
LDTYPPFSPLLVELMQEAWLLSSTELNQTELRSGAILLASLIHPDRYYSFEMIGLFEKINKEAIRKNFDLVLERSSESDH
VVSDSQDKSTSSSVAAGNSALGKFCTNVTLQAKNDELDPVLCREDELNLMVDILCRRRKNNPIVVGEAGVGKSAVVEGLA
LRIVAGNVPDKLANVEIHSLDLGLLQAGASIKGEFEKRLKGIIDEIKSSPVPIILFIDEAHTLIGSGNQEGGSDAANLLK
PALARGELSTIAATTWKEYKKYFEKDPALTRRFQLVKVEEPSVSQSVDIMRGLHHVYEKAHGVLIHDDALKASSELSARY
LSGRQLPDKAIDVLDTACARIAINISTPPKVLGQLENQCCTRQREIDMLKRQALIGQPVDNDYLESLIELEVQAELEKET
LLNSWSKQKEIIEKIIDIRQSILRNPVADDEALSDDELDELREQLAASYQELEQIPHHERLMYPEVNAQQIAEVISDWTG
VPIDQMNSDELHKITHLPEILNAKIKGQDVAIECVHRHLLTSRADLRRPGRPKGAFLLVGPSGVGKTETVIQLAEELYGG
KQFLTTINMSEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRKKPYSVVLLDEVEKAHPEVLNLFYQAFDKGELADGEGR
LIDCQNILFFLTSNLGYQTIVDNVETPKEIEAKLYPELVPFFKPALLARMEIVPYLPLNKDVLEKIVLGKLSSLEKLLRK
RYSAEVEIDPALVQEILNRATRSENGARMLEAIIEGQVLPPISLALLNRLAEQQPVSRIFMTIEEGEFVGEIE*

  Nucleotide sequence: 2622 bp    

>T6CP002157 NC_009654:1346109-1348730 [Marinomonas sp. MWYL1] [TssH]
GTGATTAGAATTGAACTTTCCACACTGATTTCTAAATTAAACTCCCAGAGCAAATTGGCTTTGGAGCAAGCTGCCGCATT
ATGTATTGAACGACAGCATCATGAAGTCAGTATTGAACACTTTTTAAGCGTTTTACTTGAAAACCCTATGTCTGATGTGT
GTGTGATTTTTGATCATGTTAAATTGGGCAAGGATGATATTCAGGCTGCAATCTCTAAAAGTTACCCAAGATCAACAACA
CTCGATACTTACCCGCCATTTTCTCCGTTATTAGTCGAGCTGATGCAGGAGGCGTGGTTGTTATCTTCAACTGAGCTAAA
TCAAACTGAATTACGATCTGGTGCTATTTTACTTGCATCCCTTATTCATCCTGATCGTTATTATTCTTTTGAAATGATTG
GCCTTTTTGAAAAAATTAACAAAGAAGCCATTCGTAAGAACTTTGATCTTGTGCTTGAGCGTTCTTCCGAGTCAGATCAT
GTTGTAAGCGACTCTCAAGATAAATCCACTTCGTCTTCCGTGGCTGCGGGTAACTCTGCATTGGGTAAATTTTGTACCAA
TGTGACCTTGCAAGCGAAGAATGATGAGCTTGATCCTGTGCTTTGTCGTGAAGATGAATTGAATCTTATGGTCGATATTC
TTTGTCGTCGTAGAAAGAATAATCCTATTGTTGTGGGTGAAGCAGGGGTTGGTAAAAGCGCTGTTGTAGAAGGCCTTGCA
CTTAGAATTGTTGCTGGGAATGTGCCAGATAAGCTTGCTAATGTAGAAATCCACTCTCTGGATTTAGGTCTTTTGCAAGC
TGGTGCGTCGATTAAAGGGGAGTTTGAAAAACGTCTCAAGGGCATTATTGATGAGATTAAATCCTCACCTGTTCCGATTA
TTTTGTTTATCGATGAAGCACACACTCTGATTGGTTCTGGTAATCAAGAAGGTGGTAGTGATGCTGCCAACCTATTAAAG
CCAGCTTTGGCGCGTGGTGAATTGTCTACCATTGCGGCAACGACTTGGAAAGAATACAAAAAATACTTTGAGAAAGATCC
TGCGCTAACAAGACGTTTCCAACTGGTTAAAGTGGAAGAACCGTCTGTTAGTCAATCTGTTGATATCATGCGTGGCTTAC
ACCATGTCTATGAAAAAGCGCACGGCGTTTTAATTCATGATGATGCGTTGAAAGCGTCCTCTGAATTATCGGCTCGCTAT
TTGTCAGGTCGCCAGCTTCCTGATAAAGCCATAGATGTACTGGATACGGCTTGCGCTCGTATTGCTATCAATATATCGAC
ACCGCCAAAAGTATTGGGGCAGTTAGAAAATCAATGTTGTACGCGCCAGCGTGAAATAGACATGTTGAAGCGACAAGCAT
TGATTGGCCAGCCTGTTGATAACGACTATCTAGAAAGTTTGATTGAATTGGAAGTTCAAGCAGAATTAGAAAAAGAAACT
CTGCTAAACAGCTGGTCAAAGCAGAAAGAGATAATTGAAAAAATTATCGATATCCGCCAATCCATTTTACGCAATCCAGT
GGCTGACGATGAAGCCTTGAGTGATGATGAGCTAGATGAACTTCGCGAGCAGCTAGCCGCTAGCTATCAGGAACTTGAGC
AGATCCCTCATCATGAACGTTTGATGTACCCAGAAGTAAATGCACAACAAATAGCTGAAGTGATTTCTGATTGGACTGGT
GTGCCGATTGATCAAATGAACTCTGATGAACTGCATAAAATCACGCACTTGCCTGAAATCTTAAACGCTAAGATTAAAGG
CCAGGATGTGGCCATTGAGTGTGTTCATAGGCACTTACTGACATCAAGAGCAGACCTTAGACGCCCAGGTCGTCCGAAAG
GCGCTTTCTTGTTGGTTGGTCCAAGTGGTGTGGGTAAAACGGAAACAGTTATTCAATTGGCAGAAGAGCTGTACGGCGGA
AAGCAATTCCTAACCACCATCAACATGTCTGAGTATCAAGAGAAGCACACGGTTTCGCGACTAATTGGTTCTCCACCAGG
TTATGTGGGCTTTGGTGAAGGCGGTGTACTGACAGAAGCTATTCGTAAGAAACCATACTCTGTTGTGCTTCTGGATGAAG
TAGAAAAAGCACACCCAGAGGTGTTGAACTTGTTCTATCAGGCCTTTGATAAAGGCGAATTGGCTGATGGAGAAGGTCGC
TTAATCGACTGTCAAAATATTCTCTTTTTCCTAACGTCTAACCTTGGTTATCAAACTATCGTCGACAACGTAGAGACACC
AAAAGAGATTGAAGCCAAGCTTTATCCTGAGCTGGTGCCATTCTTTAAACCCGCTTTGTTAGCTCGTATGGAAATCGTGC
CATATTTGCCACTCAATAAAGACGTGTTAGAGAAGATAGTGCTGGGCAAATTATCTTCCCTAGAAAAATTGTTACGCAAA
CGTTACTCCGCTGAAGTAGAAATTGATCCGGCATTGGTTCAAGAGATTTTGAACCGTGCCACACGATCAGAGAATGGTGC
CCGAATGTTAGAAGCCATAATAGAGGGACAAGTATTACCACCTATTTCTCTTGCGCTTCTTAATCGACTGGCCGAGCAAC
AACCAGTATCCCGAATCTTCATGACCATTGAAGAAGGGGAGTTCGTAGGTGAGATCGAATAG