Detailed information of component protein
Summary
| Component ID | T6CP002156 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00216  (Type i1) |
| Strain | Marinomonas sp. MWYL1 |
| Replicon | chromosome |
| Sequence | Protein sequence (259 a.a.); Nucleotide sequence (777 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | MMWYL1_RS06105 |
| Coordinate (Strand) | 1345279..1346055 (+) |
| NCBI ID | WP_012068919.1 |
| RefSeq | NC_009654 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 9e-55 | 38..239 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 259 a.a.
>T6CP002156 NC_009654:1345279-1346055 [Marinomonas sp. MWYL1] [TssL]
MASNGIIGKYDDLLFDEAENINDDKDYWFQIKGHNDNPLIDSATTFFGLSLRVKSLSECENIEEIYRQTIEEINIIEIEL
ADKHYEHSVLMAYRYILCAFLDEAVMGTRWGGSSAWAEYSMLSRFHNETWGGEKVFSILSRLEKDPEKYKDLLEFIYYCL
VLGFEGKFKVLNNGKEEREKVISKLHSLLDSMDEKESLKLTSKNDHVVNTRYKLSKQLPVWSVFAFFAAFWGLTFCGYLF
LLNSKSSNVLMQLNQILQ*
MASNGIIGKYDDLLFDEAENINDDKDYWFQIKGHNDNPLIDSATTFFGLSLRVKSLSECENIEEIYRQTIEEINIIEIEL
ADKHYEHSVLMAYRYILCAFLDEAVMGTRWGGSSAWAEYSMLSRFHNETWGGEKVFSILSRLEKDPEKYKDLLEFIYYCL
VLGFEGKFKVLNNGKEEREKVISKLHSLLDSMDEKESLKLTSKNDHVVNTRYKLSKQLPVWSVFAFFAAFWGLTFCGYLF
LLNSKSSNVLMQLNQILQ*
Nucleotide sequence: 777 bp
>T6CP002156 NC_009654:1345279-1346055 [Marinomonas sp. MWYL1] [TssL]
ATGGCTAGTAATGGCATTATTGGTAAATATGATGATTTGCTTTTTGATGAAGCAGAAAACATAAATGATGACAAGGATTA
CTGGTTTCAAATAAAAGGCCACAATGATAATCCTTTAATTGACTCTGCGACGACTTTCTTTGGCTTATCTTTAAGGGTTA
AGTCTTTAAGTGAGTGTGAAAATATTGAAGAAATATACAGGCAGACTATCGAAGAAATTAACATTATCGAAATAGAACTT
GCTGATAAGCATTATGAGCATTCTGTGCTGATGGCATATCGCTATATCTTGTGTGCTTTTTTGGATGAAGCCGTCATGGG
AACTCGATGGGGTGGCTCATCTGCATGGGCTGAATACTCTATGCTATCTCGTTTCCACAATGAAACATGGGGTGGAGAGA
AAGTATTTTCAATTTTATCTAGGTTGGAAAAAGACCCTGAAAAATATAAGGATCTGCTGGAATTTATTTATTACTGTTTG
GTTTTAGGCTTTGAAGGGAAGTTTAAAGTTTTAAATAATGGTAAAGAAGAAAGGGAAAAGGTTATTAGTAAACTGCATTC
ACTTTTAGATTCAATGGATGAAAAAGAATCTTTAAAGCTGACTTCTAAAAATGATCATGTAGTAAATACCCGTTACAAGT
TAAGCAAACAGTTGCCTGTTTGGTCTGTTTTTGCATTTTTTGCTGCTTTTTGGGGATTAACTTTTTGCGGTTATTTATTT
TTATTGAACAGCAAATCTTCAAATGTACTTATGCAGCTTAATCAAATACTGCAGTAA
ATGGCTAGTAATGGCATTATTGGTAAATATGATGATTTGCTTTTTGATGAAGCAGAAAACATAAATGATGACAAGGATTA
CTGGTTTCAAATAAAAGGCCACAATGATAATCCTTTAATTGACTCTGCGACGACTTTCTTTGGCTTATCTTTAAGGGTTA
AGTCTTTAAGTGAGTGTGAAAATATTGAAGAAATATACAGGCAGACTATCGAAGAAATTAACATTATCGAAATAGAACTT
GCTGATAAGCATTATGAGCATTCTGTGCTGATGGCATATCGCTATATCTTGTGTGCTTTTTTGGATGAAGCCGTCATGGG
AACTCGATGGGGTGGCTCATCTGCATGGGCTGAATACTCTATGCTATCTCGTTTCCACAATGAAACATGGGGTGGAGAGA
AAGTATTTTCAATTTTATCTAGGTTGGAAAAAGACCCTGAAAAATATAAGGATCTGCTGGAATTTATTTATTACTGTTTG
GTTTTAGGCTTTGAAGGGAAGTTTAAAGTTTTAAATAATGGTAAAGAAGAAAGGGAAAAGGTTATTAGTAAACTGCATTC
ACTTTTAGATTCAATGGATGAAAAAGAATCTTTAAAGCTGACTTCTAAAAATGATCATGTAGTAAATACCCGTTACAAGT
TAAGCAAACAGTTGCCTGTTTGGTCTGTTTTTGCATTTTTTGCTGCTTTTTGGGGATTAACTTTTTGCGGTTATTTATTT
TTATTGAACAGCAAATCTTCAAATGTACTTATGCAGCTTAATCAAATACTGCAGTAA