SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP002155
Component protein type	TssK
T6SS ID (Type)	T6SS00216 (Type i1)
Strain	Marinomonas sp. MWYL1
Replicon	chromosome
Sequence	Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference	[1] Bernard CS, Brunet YR, Gavioli M, et al. Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins. J Bacteriol. 2011 May;193(9):2158-67. doi: 10.1128/JB.00029-11. Epub 2011 Mar 4. PMID: 21378190

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	MMWYL1_RS06100
Coordinate (Strand)	1343942..1345276 (+)
NCBI ID	WP_012068918.1
RefSeq	NC_009654
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_VasE	PF05936.14	1.9e-150	19..442

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 445 a.a.

						>T6CP002155 NC_009654:1343942-1345276 [Marinomonas sp. MWYL1] [TssK]
MISRNRVIWNEGLFIKPQHFQQQQRYNEYSLNERVQSVSSYLYGISHLSINPEYLSFGRIAIDSAVGVMPDGTVFRIPQD
DMLPDALDIDDATLTGQTIYLAIPLKNESLLEIDWPNEKGTGRYASHRQEVKDTQSVDGDTAVIDLASMRLKLMFEKEDR
SAYASIAIAQIREKRQDGSIVLEPDFIPCHLDVNCNPQLHRCINELSGLMKERAKGIAVRLGASGQGAIADVSDFMLLQA
LNRLQPILQHLVHLKRLHPERLYEALASICGELSTFTDESRLSPDFKGYNHDLPSDSFWQVIRYLRQSLSVVLEPRAVSV
QLHQRKYGLMVAPIHDTQLIDNADFILAVKANMPLDELRNLFIQQTKVSSVEKIRDLISHQLPGIPVLPLPVAPRQLPYF
SGYTYYQLDKTSEAWRMLENSSGFAFHVAGAFEGLDLQFWAIRD*					

Nucleotide sequence: 1335 bp

						>T6CP002155 NC_009654:1343942-1345276 [Marinomonas sp. MWYL1] [TssK]
ATGATTTCTAGGAATAGAGTTATTTGGAATGAAGGACTATTTATTAAGCCCCAACATTTTCAGCAACAGCAAAGGTACAA
CGAGTACTCTTTAAATGAAAGAGTGCAATCTGTTAGTAGCTATTTATATGGGATATCCCATTTATCTATTAATCCAGAAT
ATTTATCTTTTGGACGAATAGCGATTGATAGTGCTGTTGGTGTAATGCCTGATGGTACGGTATTTCGTATTCCTCAGGAC
GACATGCTTCCAGATGCTTTGGATATTGATGATGCAACTTTAACAGGTCAAACGATATATTTGGCAATACCGTTAAAAAA
TGAATCCTTGTTAGAAATTGACTGGCCTAATGAAAAAGGCACAGGACGATATGCTAGCCATCGTCAAGAAGTAAAAGATA
CTCAGTCTGTAGATGGCGATACCGCTGTTATAGACTTAGCTTCTATGCGTCTTAAATTGATGTTTGAAAAAGAGGATCGT
AGTGCTTACGCCTCTATTGCTATCGCCCAAATCCGAGAGAAGCGTCAGGACGGTAGTATTGTTTTGGAACCTGATTTCAT
ACCTTGCCACCTAGATGTTAACTGTAATCCTCAGTTACATCGTTGTATTAACGAGTTATCAGGTTTAATGAAAGAGCGTG
CGAAAGGTATTGCGGTTCGTTTGGGAGCATCAGGCCAAGGTGCTATTGCTGATGTTTCTGATTTTATGTTGCTTCAAGCG
TTAAATAGATTACAGCCAATTCTTCAGCATCTTGTTCACTTAAAACGCTTGCATCCAGAACGTTTATATGAAGCGCTAGC
GTCTATTTGTGGTGAGTTATCAACATTTACTGATGAAAGTCGCTTGTCTCCTGATTTTAAAGGCTATAACCATGACTTAC
CAAGCGATTCTTTTTGGCAAGTGATTCGCTATCTGCGTCAGAGCTTAAGTGTGGTTCTTGAACCAAGAGCGGTTTCGGTT
CAATTGCATCAACGTAAGTACGGCCTAATGGTTGCACCAATTCATGATACTCAGTTAATTGATAATGCAGACTTTATCTT
AGCGGTTAAGGCGAATATGCCATTGGATGAATTGAGAAATCTATTTATCCAGCAAACAAAAGTGTCTTCAGTAGAAAAGA
TCAGAGATCTTATTTCACATCAATTACCTGGTATACCTGTTTTGCCTTTACCTGTAGCACCAAGACAGTTGCCATATTTC
TCTGGTTATACCTATTACCAATTAGATAAAACAAGTGAGGCTTGGAGAATGTTAGAAAATTCTTCTGGTTTTGCTTTCCA
TGTCGCAGGGGCGTTTGAAGGTTTAGATTTACAATTTTGGGCGATAAGGGATTAA					