Detailed information of component protein


Summary

Component ID T6CP002153
Component protein type TssG
T6SS ID (Type) T6SS00216 insolico (Type i1)
Strain Marinomonas sp. MWYL1
Replicon chromosome
Sequence Protein sequence (324 a.a.); Nucleotide sequence (972 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) MMWYL1_RS06085
Coordinate (Strand) 1340973..1341944 (+)
NCBI ID WP_198135074.1
RefSeq NC_009654
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 9.1e-84 15..309
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 324 a.a.    

>T6CP002153 NC_009654:1340973-1341944 [Marinomonas sp. MWYL1] [TssG]
IASSSEPNIFPEDVEKFNFYQLVELLYRLIEQDPEESDWESKCQLVFSANPSLGFSPTDVSSLKLLDDNRILLETNFFGL
NGSQSPLPGFMLEQLVTEGEFGLKRQFLDFFNNRLISLVYQIWRKYRYYIRFQGEAKDKFSSQLFALVGLADEGMRGETP
INWCKMLAYSGTLAGRSRSPQVVEGIISHCFDLPEVSIRQWIKRKVPIHQEQKLQLGMQNCGLGRETVLGDSVNDIKGKF
AIEIKGLDKERFADFLPSGREFSPLCKLVEFTLREQMAYDLELVLKDDEVSTMSLGNNSVSLGWTSFLGEPKEAKKVVIQ
VRQ*

  Nucleotide sequence: 972 bp    

>T6CP002153 NC_009654:1340973-1341944 [Marinomonas sp. MWYL1] [TssG]
ATCGCCTCTTCCAGTGAGCCAAATATATTTCCAGAAGATGTTGAAAAATTTAATTTTTATCAGCTTGTCGAGTTGTTGTA
TCGGCTTATAGAGCAAGATCCCGAAGAAAGCGATTGGGAATCGAAGTGTCAGTTGGTATTTAGTGCCAATCCAAGCTTAG
GCTTTTCTCCAACTGATGTTTCGTCGTTAAAGCTTCTGGATGATAACCGTATATTGCTTGAAACCAATTTTTTTGGCTTG
AATGGCTCTCAGTCGCCACTGCCGGGCTTTATGCTTGAGCAGTTGGTAACGGAAGGTGAGTTTGGTTTAAAGCGTCAGTT
TCTCGATTTTTTTAACAATCGTTTGATCTCGCTTGTTTACCAAATTTGGAGGAAGTATCGCTACTACATTCGTTTCCAAG
GTGAAGCAAAGGACAAATTCTCAAGCCAATTGTTTGCCTTAGTGGGGTTAGCTGATGAAGGGATGAGAGGCGAAACACCG
ATTAACTGGTGCAAAATGCTGGCTTATTCCGGCACTTTAGCCGGGCGAAGCCGTTCTCCCCAAGTGGTTGAGGGGATTAT
TTCGCACTGTTTTGATCTGCCTGAAGTATCGATACGGCAATGGATTAAGCGCAAAGTGCCAATTCATCAAGAGCAAAAGC
TGCAATTAGGGATGCAAAACTGTGGGCTAGGACGAGAAACTGTTTTGGGCGACAGTGTTAATGATATTAAAGGGAAGTTT
GCTATAGAAATTAAGGGTTTAGATAAAGAGCGATTTGCCGATTTTTTGCCAAGCGGTCGAGAATTTTCGCCTTTATGTAA
GCTAGTTGAGTTTACCTTGAGAGAACAGATGGCCTACGACCTTGAGTTAGTCTTAAAGGACGATGAAGTATCTACTATGT
CGTTAGGCAATAACAGTGTGTCTTTAGGCTGGACATCCTTTCTTGGTGAGCCAAAAGAAGCGAAAAAAGTAGTCATACAG
GTAAGACAATAG