Detailed information of component protein


Summary

Component ID T6CP002152
Component protein type TssF
T6SS ID (Type) T6SS00216 insolico (Type i1)
Strain Marinomonas sp. MWYL1
Replicon chromosome
Sequence Protein sequence (589 a.a.); Nucleotide sequence (1767 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) MMWYL1_RS06080
Coordinate (Strand) 1339201..1340967 (+)
NCBI ID WP_012068914.1
RefSeq NC_009654
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.3e-149 5..579
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 589 a.a.    

>T6CP002152 NC_009654:1339201-1340967 [Marinomonas sp. MWYL1] [TssF]
VSQDKYFREELAFLREQGKQFTEIHPQLSRFLHGRNTDPDVERLLEGFAFLTGRLREKIEDEFPELTHSIINMLWPNYLR
PVPSMSVVKFKPEDNVSTKHVIQSGVQLDSRPVFGTTCHFRTCRDVSIYPLDCVDVSAQHTREASTVNLAMKIDGDLTLD
DIKLDTLRFYLGGDKFSAEMTYLWLNHYLEKIVIEVGGVEFKLPKDTLSLVGFEAADSLLPYPKNVYDGYRILQEYLTFS
ESFNFFDLKGLSSALPKNISGEFTIKMVFNKTFEPGVKVRKEMFQLYCTLVVNLFEHDADPIDLTGRKTEYRIIPSSTSP
SHYEVFSIDEVAGWQNSSNGGRARGAKRVYSSFESFQHEVERARHRESLYYRARVKDSIRNDGFDNFISFVRGDESSVYN
FDEAVSLKLTCTNRQLPLELGIGDICEPTDTSPTFATFENITIPSPPLRPVLDGSLLWTLISNLSLNYLSLLSKDALCSV
LRAYDFKALVDRQAERVSRLRLSGILKIESMPTDKLIQGMPIRGLKSTITLDQAAFGSEGELFLFGTVLSKFFSLYASIN
SFHELVVINSSNKEAYTWGIQEGMQPLI*

  Nucleotide sequence: 1767 bp    

>T6CP002152 NC_009654:1339201-1340967 [Marinomonas sp. MWYL1] [TssF]
GTGAGCCAAGATAAGTATTTTAGAGAAGAGCTGGCGTTTTTACGTGAGCAAGGAAAGCAATTTACGGAAATTCATCCTCA
GCTTTCTCGTTTCTTGCATGGGCGAAATACGGACCCTGATGTTGAGCGATTGTTAGAGGGGTTTGCTTTTCTAACCGGGC
GTTTAAGGGAAAAAATTGAAGATGAGTTCCCTGAGTTAACTCATTCAATCATTAATATGCTTTGGCCTAATTATCTGCGA
CCAGTGCCAAGTATGAGTGTTGTTAAGTTTAAGCCAGAGGATAACGTGAGCACTAAGCACGTTATTCAGTCTGGTGTTCA
ACTTGATAGTCGTCCAGTTTTTGGTACTACATGTCATTTTAGAACCTGCCGCGACGTCTCTATTTACCCTTTAGATTGTG
TAGACGTTTCTGCGCAACATACAAGGGAGGCGAGTACCGTAAATCTTGCAATGAAAATTGACGGAGATTTAACGCTCGAT
GACATCAAGCTCGATACATTAAGGTTCTATTTAGGTGGTGATAAATTCAGCGCTGAGATGACTTATTTATGGCTGAATCA
CTATTTAGAAAAAATTGTGATAGAGGTCGGTGGTGTTGAATTTAAACTGCCGAAAGATACTTTATCACTGGTAGGTTTTG
AAGCTGCCGATAGTTTGCTTCCGTACCCCAAAAATGTTTATGACGGCTATCGAATTCTTCAGGAATATTTAACCTTTTCA
GAAAGCTTCAACTTCTTTGATTTGAAAGGATTATCTAGTGCTTTACCTAAAAATATTTCTGGTGAATTTACTATTAAAAT
GGTCTTCAACAAAACGTTCGAGCCTGGTGTAAAAGTTAGGAAGGAAATGTTTCAGCTGTATTGTACACTGGTCGTTAATT
TGTTTGAGCATGATGCAGACCCTATTGATCTAACAGGGCGTAAAACAGAATACAGGATAATTCCATCCAGTACCTCACCG
TCACATTATGAAGTCTTTAGTATCGATGAGGTTGCTGGTTGGCAAAATAGCAGTAATGGTGGTCGTGCTAGAGGTGCGAA
GCGTGTGTATTCCTCGTTTGAAAGTTTTCAGCATGAGGTGGAGCGTGCTAGACATCGTGAATCTCTTTATTACAGAGCTC
GTGTAAAAGACAGTATTAGAAATGATGGTTTTGATAACTTTATTTCTTTTGTCAGAGGTGACGAGTCGTCTGTTTATAAC
TTTGATGAAGCTGTTTCTCTTAAGCTAACTTGTACCAATAGACAGTTGCCGCTTGAGCTTGGTATTGGCGATATTTGTGA
ACCTACTGACACGTCTCCAACGTTCGCAACTTTTGAAAATATAACGATACCATCGCCTCCTTTAAGGCCTGTTTTAGATG
GCAGCCTGCTTTGGACCTTGATTTCCAATTTATCATTAAATTATCTGTCATTGCTGTCTAAAGATGCTCTTTGCTCTGTA
TTGCGGGCTTATGATTTTAAGGCATTAGTAGATCGTCAGGCTGAGCGCGTTTCTAGATTACGGTTGAGCGGCATCCTCAA
AATAGAGTCGATGCCGACGGATAAATTGATCCAGGGAATGCCCATTCGGGGGTTGAAATCAACGATAACCTTAGATCAGG
CTGCTTTTGGTTCGGAAGGTGAATTATTTTTGTTTGGCACAGTGCTGAGTAAGTTTTTTTCTTTATACGCAAGTATCAAT
TCATTTCATGAATTGGTCGTAATTAACTCAAGCAATAAAGAGGCATATACGTGGGGAATTCAGGAAGGGATGCAACCACT
GATATAG