SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP002151
Component protein type	TssC
T6SS ID (Type)	T6SS00216 (Type i1)
Strain	Marinomonas sp. MWYL1
Replicon	chromosome
Sequence	Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference	[1] Bernard CS, Brunet YR, Gavioli M, et al. Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins. J Bacteriol. 2011 May;193(9):2158-67. doi: 10.1128/JB.00029-11. Epub 2011 Mar 4. PMID: 21378190

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	MMWYL1_RS06070
Coordinate (Strand)	1337275..1338756 (+)
NCBI ID	WP_012068912.1
RefSeq	NC_009654
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
VipB	PF05943.14	1.3e-126	67..366
VipB_2	PF18945.2	5.2e-45	379..490

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 494 a.a.

						>T6CP002151 NC_009654:1337275-1338756 [Marinomonas sp. MWYL1] [TssC]
MSTNDIAVEGSSVGQGRGNLLDEIMAQTRIAPNEEGYDVAKKGVAAFIENLLQSNKTEEPVNKTLVDQMLVELDRKISSQ
MNEILHDESFQQMESAWRGLKLLVDRTDFRENNKIELIHVTKSELLEDFEFAPETTQSGLYKHVYSSGYGQFGGEPTGAI
IGNYAFTPSSSDMKLLQYMGALGAMSHAPFISSVGPEFFGIESFEELPNLKDLNSIFEGPKYAKWRTLRESEDARYIGLT
APRFLLRVPYDPIENPIKSFNYQEDVSKSHSDYLWGNTAFAFASRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMG
ELQAKIPTEVLVTDRKEFELAEEGFIALTMRKGSDNAAFFSANSVQKPKVFPNTKDGKEAETNYRLSTQLPYMMIVNRLA
HYVKVLQREQIGAWKERGDLERELNGWIKQYVADQENPPADVRSRRPLRGAKIEVSDVEGNPGWYQVSLAVRPHFKYMGA
NFELSLVGRLDQA*					

Nucleotide sequence: 1482 bp

						>T6CP002151 NC_009654:1337275-1338756 [Marinomonas sp. MWYL1] [TssC]
ATGTCTACAAATGATATTGCAGTCGAAGGAAGTTCGGTAGGTCAAGGGCGTGGAAATCTGCTTGACGAAATAATGGCCCA
AACTCGCATAGCTCCGAATGAAGAGGGTTATGATGTTGCTAAAAAAGGTGTTGCGGCTTTTATTGAGAATTTACTTCAAT
CAAATAAAACTGAGGAACCAGTTAATAAGACCTTAGTTGATCAAATGCTTGTTGAATTAGATCGTAAAATCAGTAGTCAA
ATGAATGAAATACTACATGATGAATCTTTTCAGCAAATGGAGTCTGCTTGGCGTGGGCTAAAACTGCTAGTCGATCGAAC
TGACTTTAGAGAAAACAATAAAATTGAGCTAATTCATGTTACTAAGTCTGAATTGCTTGAAGATTTTGAGTTTGCTCCTG
AAACCACACAGAGTGGCCTTTATAAGCATGTTTACTCTTCTGGTTATGGTCAATTTGGTGGTGAGCCGACAGGTGCCATT
ATCGGTAATTATGCCTTCACTCCTTCCTCATCTGATATGAAGTTGCTTCAGTATATGGGAGCTTTAGGTGCGATGTCTCA
TGCGCCATTTATTTCAAGTGTTGGTCCTGAGTTTTTTGGTATTGAATCTTTTGAAGAGCTTCCAAACCTTAAAGATCTGA
ACTCTATTTTTGAAGGGCCAAAATACGCAAAATGGCGCACTCTTCGTGAATCTGAAGATGCTCGTTATATTGGTTTAACT
GCACCACGTTTTTTATTACGTGTTCCGTATGACCCAATTGAAAATCCTATTAAATCTTTTAACTATCAGGAAGACGTGAG
TAAGTCTCATAGTGATTACCTTTGGGGGAATACCGCTTTTGCTTTTGCTTCACGTTTGACTGACAGTTTTGCTAAATACC
GCTGGTGTCCAAATATTATTGGACCGCAAAGTGGTGGTGCAGTAGAGGACTTGCCGGTTCATGTATTTGAGTCTATGGGT
GAATTGCAAGCTAAAATTCCTACAGAAGTATTGGTAACGGATAGAAAAGAGTTCGAATTAGCCGAAGAAGGCTTTATTGC
TCTAACTATGCGTAAAGGTAGTGATAACGCTGCTTTCTTCTCGGCGAACTCAGTACAAAAGCCGAAGGTATTTCCTAATA
CGAAAGACGGTAAGGAAGCGGAGACCAATTACCGCTTAAGTACTCAATTGCCTTACATGATGATTGTTAACCGTTTGGCG
CATTACGTTAAAGTGCTTCAGCGTGAGCAAATTGGTGCGTGGAAAGAGCGTGGCGATCTAGAGCGTGAATTGAATGGTTG
GATCAAGCAATATGTTGCTGACCAAGAAAACCCACCTGCAGATGTTCGTAGTCGTCGCCCACTTCGTGGCGCAAAAATTG
AAGTATCCGATGTGGAAGGTAATCCAGGTTGGTATCAAGTGTCTTTGGCAGTACGTCCTCATTTTAAATATATGGGTGCG
AACTTCGAGCTGTCTCTTGTTGGCCGTTTAGATCAAGCATAA					