Detailed information of component protein
Summary
| Component ID | T6CP002150 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00216  (Type i1) |
| Strain | Marinomonas sp. MWYL1 |
| Replicon | chromosome |
| Sequence | Protein sequence (167 a.a.); Nucleotide sequence (501 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | MMWYL1_RS06065 |
| Coordinate (Strand) | 1336721..1337221 (+) |
| NCBI ID | WP_012068911.1 |
| RefSeq | NC_009654 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1.1e-54 | 6..157 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 167 a.a.
>T6CP002150 NC_009654:1336721-1337221 [Marinomonas sp. MWYL1] [TssB]
MSKEGSVAPKERINIKYIPATGDSQSEVELPLKTLVVGDFKGHAEDTPLEDRKSISIDKANFESVMRESNLRLQTTVSNK
LDEESDGDLTVDLSFSGINDFSPDSIASQVPELKKLIELREALVALKGPLGNIPSFRNSLQGLLASDESRDQLLAELNLA
HGNESN*
MSKEGSVAPKERINIKYIPATGDSQSEVELPLKTLVVGDFKGHAEDTPLEDRKSISIDKANFESVMRESNLRLQTTVSNK
LDEESDGDLTVDLSFSGINDFSPDSIASQVPELKKLIELREALVALKGPLGNIPSFRNSLQGLLASDESRDQLLAELNLA
HGNESN*
Nucleotide sequence: 501 bp
>T6CP002150 NC_009654:1336721-1337221 [Marinomonas sp. MWYL1] [TssB]
ATGTCAAAAGAGGGAAGTGTCGCACCCAAAGAGCGGATAAATATTAAATATATACCTGCTACTGGAGATTCTCAGTCTGA
GGTTGAGTTGCCTCTAAAAACCTTGGTTGTTGGTGACTTTAAAGGTCATGCAGAGGATACGCCTTTAGAAGATAGAAAGA
GCATTTCTATAGATAAAGCTAATTTTGAGTCTGTAATGCGTGAAAGTAATTTGCGTCTTCAGACGACAGTTAGTAATAAG
CTAGATGAGGAGTCTGATGGTGATTTAACAGTAGATCTTTCTTTTAGTGGGATTAATGATTTTTCACCAGATTCAATTGC
ATCGCAAGTTCCAGAGCTTAAAAAATTAATAGAGCTAAGAGAAGCTTTAGTAGCGTTAAAAGGTCCATTGGGTAATATCC
CTTCTTTCAGAAATAGTTTGCAAGGCTTGTTAGCATCAGATGAAAGTCGTGATCAGCTATTGGCTGAATTAAATCTAGCT
CATGGGAATGAGTCAAATTAA
ATGTCAAAAGAGGGAAGTGTCGCACCCAAAGAGCGGATAAATATTAAATATATACCTGCTACTGGAGATTCTCAGTCTGA
GGTTGAGTTGCCTCTAAAAACCTTGGTTGTTGGTGACTTTAAAGGTCATGCAGAGGATACGCCTTTAGAAGATAGAAAGA
GCATTTCTATAGATAAAGCTAATTTTGAGTCTGTAATGCGTGAAAGTAATTTGCGTCTTCAGACGACAGTTAGTAATAAG
CTAGATGAGGAGTCTGATGGTGATTTAACAGTAGATCTTTCTTTTAGTGGGATTAATGATTTTTCACCAGATTCAATTGC
ATCGCAAGTTCCAGAGCTTAAAAAATTAATAGAGCTAAGAGAAGCTTTAGTAGCGTTAAAAGGTCCATTGGGTAATATCC
CTTCTTTCAGAAATAGTTTGCAAGGCTTGTTAGCATCAGATGAAAGTCGTGATCAGCTATTGGCTGAATTAAATCTAGCT
CATGGGAATGAGTCAAATTAA