Detailed information of component protein


Summary

Component ID T6CP002149
Component protein type TssI
T6SS ID (Type) T6SS00216 insolico (Type i1)
Strain Marinomonas sp. MWYL1
Replicon chromosome
Sequence Protein sequence (656 a.a.); Nucleotide sequence (1968 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) MMWYL1_RS06055
Coordinate (Strand) 1333278..1335245 (-)
NCBI ID WP_012068909.1
RefSeq NC_009654
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 4.7e-74 42..335
Phage_base_V PF04717.14 2.3e-14 393..458
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 656 a.a.    

>T6CP002149 NC_009654:c1335245-1333278 [Marinomonas sp. MWYL1] [TssI]
MATLTFTLALDGMEDNTLLVREYQGHESLSDSLLKDGSPCYGFRYQLALASRQSDLSADTIVDKNAELRVFRNGELIQRV
HGIVRHFEKGDTGHHFTYYGLTLVPALERLSLRHNSRIFQKQTAQDIISQLLNEMGITEHLFDTQRTPLEREFCAQYRES
DLDFVHRLAAEEGWVYYFTHEEGKHQLHFADQSQLLPKHPTPIPYNVLSGGGSDDQYIATLTHHTQSLPSQAVLKDYSFK
KPDYRFLHQQDGENLDYQLPNYEHYDAPGRFKDDVTGKAFSRIRLEYLRRSARTLVGESNHAAIQAGLKITIEGHSEDSI
NQEWLPVSVEHHGTQPQVLEEEGQSGSTNYSNTFTFIPATTNWQATPQPKPSVDGPMMAIVVGPEGEEIFCDEHGRVKLH
FPWDRYSEANDHSSCWVRVSQGWAGNQHGMMAIPRIGSEVIVSFLNGDPDQPIVTGRTFNAKNTPPYLLPDHKTKTVWRS
DTHQGEGFNEISFEDQVDNEKVYVHAQKDMETDVLNDRITHIGHDQHGQIDNDRFTQIGGENGTGNDHLTIKGESRHKID
KDHTLMVDGSLQQKVGSKAVLDAAKEIHLKSGSKAVIEAGSEMTIKVGGNFIKIDAAGVHVVGSAINFNTGGSASSGSGF
SGVEPEPPVIDKATE*

  Nucleotide sequence: 1968 bp    

>T6CP002149 NC_009654:c1335245-1333278 [Marinomonas sp. MWYL1] [TssI]
ATGGCTACATTGACGTTTACACTGGCACTCGACGGCATGGAAGACAACACTCTGCTTGTCCGAGAATACCAAGGGCACGA
ATCGCTCTCCGATTCCCTGCTAAAAGACGGCTCGCCTTGTTATGGCTTCCGTTACCAATTGGCCCTCGCCAGCCGTCAAT
CGGATCTGTCTGCTGATACCATCGTCGATAAAAACGCCGAGTTACGCGTGTTTCGTAATGGCGAACTGATTCAACGAGTG
CACGGCATCGTTCGTCATTTTGAAAAAGGCGACACTGGACACCACTTTACCTACTATGGCTTAACCTTGGTTCCGGCATT
GGAGCGCTTATCTCTACGTCACAACAGCCGTATCTTCCAAAAGCAAACCGCGCAAGACATCATCAGCCAACTGCTGAATG
AAATGGGCATCACCGAACACCTGTTTGATACCCAACGTACACCGCTTGAACGTGAGTTCTGTGCTCAGTACCGTGAAAGT
GACTTAGACTTTGTCCACCGTTTGGCCGCCGAAGAAGGCTGGGTCTACTACTTCACCCACGAAGAAGGCAAACACCAACT
GCACTTTGCGGATCAAAGCCAACTACTGCCCAAACACCCAACGCCGATTCCGTACAACGTCTTATCGGGTGGCGGCTCAG
ACGATCAATACATCGCCACCCTGACGCACCATACACAAAGCCTGCCTAGCCAAGCTGTGCTCAAAGACTACAGCTTTAAA
AAGCCCGATTACCGCTTCTTGCACCAACAAGACGGCGAGAACCTAGATTACCAGCTGCCAAACTACGAACACTACGATGC
CCCTGGGCGCTTTAAAGACGACGTTACAGGCAAAGCCTTTTCACGCATCCGTCTAGAATACCTACGTCGCAGTGCGCGCA
CCCTCGTAGGAGAAAGCAACCACGCCGCCATCCAAGCGGGCCTAAAAATCACCATCGAAGGCCACAGCGAAGACAGCATC
AACCAAGAATGGTTGCCCGTCTCGGTTGAACATCACGGCACCCAACCGCAAGTCTTGGAAGAAGAAGGCCAATCTGGCAG
CACAAACTACAGCAATACATTTACCTTTATCCCCGCCACCACCAACTGGCAAGCGACACCGCAACCCAAACCCAGTGTCG
ATGGCCCCATGATGGCCATTGTGGTGGGGCCCGAAGGGGAAGAAATCTTCTGTGACGAACACGGACGAGTCAAACTGCAC
TTCCCGTGGGACCGCTACAGCGAAGCCAACGACCATAGCTCCTGCTGGGTACGTGTCTCCCAAGGCTGGGCGGGCAACCA
ACACGGCATGATGGCGATTCCACGAATCGGCAGCGAAGTCATTGTCAGCTTTTTAAATGGCGACCCCGATCAACCGATCG
TGACCGGACGTACCTTTAACGCCAAAAACACCCCGCCGTACCTTTTGCCTGACCATAAAACCAAAACCGTGTGGCGCAGC
GATACTCACCAAGGCGAAGGCTTCAACGAGATCAGTTTTGAAGACCAAGTCGACAATGAAAAAGTCTACGTTCATGCGCA
AAAAGACATGGAAACCGATGTGCTCAACGACCGCATCACCCACATCGGTCACGACCAACACGGACAAATCGACAACGATA
GATTCACGCAAATTGGCGGTGAAAACGGCACAGGCAATGACCACCTGACCATCAAAGGCGAGAGTCGTCATAAGATCGAC
AAAGACCACACACTCATGGTGGACGGAAGTCTGCAACAGAAAGTCGGCTCGAAAGCCGTTCTGGATGCCGCAAAAGAAAT
TCATCTAAAAAGTGGCAGTAAAGCCGTGATTGAGGCCGGATCAGAAATGACGATCAAAGTCGGTGGCAACTTTATAAAAA
TCGACGCGGCTGGCGTACACGTTGTTGGCTCCGCCATCAACTTCAACACCGGCGGCAGTGCCAGCTCTGGTAGTGGGTTT
AGTGGTGTAGAACCTGAGCCACCAGTAATTGACAAAGCAACTGAGTAA