Detailed information of component protein


Summary

Component ID T6CP002147
Component protein type TssI
T6SS ID (Type) T6SS00216 insolico (Type i1)
Strain Marinomonas sp. MWYL1
Replicon chromosome
Sequence Protein sequence (695 a.a.); Nucleotide sequence (2085 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) MMWYL1_RS06000
Coordinate (Strand) 1319447..1321531 (+)
NCBI ID WP_012068898.1
RefSeq NC_009654
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 5.9e-75 42..335
Phage_base_V PF04717.14 2.5e-14 393..458
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 695 a.a.    

>T6CP002147 NC_009654:1319447-1321531 [Marinomonas sp. MWYL1] [TssI]
MATLTFTLALDGMEDNTLLVREYQGHESLSDSLLKDGSPCYGFRYQLALASRQSDLSADTIVDKNAELRVFRNGELIQRV
HGIVRHFEKGDTGHHFTYYGLTLVPALERLSLRHNSRIFQKQTAQDIISQLLNEMGITEHLFDTQRTPLEREFCVQYRES
DLDFVHRLAAEEGWVYYFTHEEGKHQLHFADQSQLLPKHPTPIPYNVLSGGGSDDQYIATLTHRTQSLPSQAVLKDYSFK
KPDYRFLHQQDGENLDYQLPNYEHYDAPGRFKDDVTGKAFSRIRLEYLRRSARTLVGESNHAAIQAGLKITIEGHSEDSI
NQEWLPVSVEHHGTQPQVLEEEGQSGSTNYSNTFTFIPATTNWQATPQPKPSVDGPMMAIVVGPEGEEIFCDEHGRVKLH
FPWDRYSEANDHSSCWVRVSQGWAGNQHGMMAIPRIGSEVIVSFLNGDPDQPIVTGRTFNAKNTPPYLLPDHKTKTVWRS
DTHQGEGFNEISFEDQVDNEKVYVHAQKDMETDVLNDRITHIGHDQHGQIDNDRFTQIGGENGTGNDHLTIKGESRHKID
KDQSISIDGNLQQKVGKIAILEAGEEIHIKSGDKTVIEAGAEITLAAGGSFVKIDGGGVHLVGSVINLNSGGSPSAGSGF
SGKLPISPLAEELPVSNEKVEEKSAPPTTQKSTLVMAAEEGNPICEECQAAANT*

  Nucleotide sequence: 2085 bp    

>T6CP002147 NC_009654:1319447-1321531 [Marinomonas sp. MWYL1] [TssI]
ATGGCTACATTGACGTTTACACTGGCACTCGACGGCATGGAAGACAACACTCTGCTTGTCCGAGAATACCAAGGGCACGA
ATCGCTCTCCGATTCCCTGCTAAAAGACGGCTCGCCTTGTTATGGCTTCCGTTACCAATTGGCCCTCGCCAGCCGTCAAT
CGGATCTGTCTGCTGATACCATCGTCGATAAAAACGCCGAGCTGCGCGTGTTTCGTAACGGCGAACTGATTCAACGAGTG
CACGGCATTGTTCGTCATTTTGAAAAAGGCGACACCGGCCACCACTTTACCTACTACGGCTTAACCTTGGTTCCAGCATT
GGAACGCTTATCTTTACGTCACAACAGCCGTATCTTCCAAAAGCAAACCGCGCAAGACATCATCAGCCAACTGCTGAATG
AAATGGGCATCACCGAACACTTGTTTGATACCCAACGTACACCGCTTGAACGTGAGTTCTGTGTCCAGTATCGTGAAAGT
GACTTAGACTTTGTCCACCGTTTGGCGGCCGAAGAAGGCTGGGTCTACTACTTCACCCACGAAGAAGGCAAACACCAACT
GCACTTTGCGGATCAAAGCCAACTACTGCCCAAACACCCAACCCCGATTCCGTACAACGTCTTATCGGGTGGCGGCTCAG
ACGATCAATACATCGCCACCCTGACACACCGTACACAAAGCTTGCCTAGCCAAGCGGTGCTCAAAGACTACAGCTTCAAA
AAACCGGACTACCGCTTCTTGCACCAACAAGACGGCGAGAACCTAGACTACCAACTGCCAAACTACGAACACTACGATGC
CCCTGGGCGCTTCAAAGACGACGTCACAGGCAAAGCCTTTTCACGCATCCGTCTAGAATACCTACGCCGCAGTGCGCGAA
CCTTAGTAGGAGAAAGCAACCACGCCGCCATCCAAGCGGGCCTAAAAATCACCATCGAAGGCCACAGCGAAGACAGCATC
AACCAAGAATGGTTGCCCGTCTCGGTTGAACATCACGGCACCCAACCGCAAGTCTTGGAAGAAGAAGGCCAATCAGGCAG
CACAAACTACAGCAATACATTTACCTTCATCCCCGCCACCACCAACTGGCAAGCGACACCGCAACCCAAACCCAGTGTCG
ATGGCCCCATGATGGCCATTGTGGTGGGGCCCGAAGGGGAAGAAATCTTCTGTGACGAACACGGACGAGTCAAACTGCAC
TTCCCGTGGGACCGCTACAGCGAAGCCAACGACCATAGCTCCTGCTGGGTACGTGTCTCCCAAGGCTGGGCTGGCAACCA
ACACGGCATGATGGCGATTCCACGAATCGGCAGCGAAGTCATTGTCAGCTTTTTAAATGGCGACCCAGATCAACCGATCG
TGACCGGACGCACCTTTAACGCCAAAAACACCCCGCCGTACCTTTTGCCTGACCATAAAACCAAAACCGTGTGGCGCAGC
GATACTCACCAAGGCGAAGGCTTCAACGAGATCAGTTTTGAGGATCAAGTCGACAACGAAAAAGTCTATGTCCACGCGCA
AAAAGACATGGAAACCGATGTGCTCAACGACCGCATCACCCACATCGGCCACGACCAACACGGACAAATCGACAACGACC
GCTTCACCCAAATCGGTGGTGAAAACGGCACAGGCAATGACCACCTGACCATCAAAGGTGAAAGTCGTCATAAGATAGAT
AAAGACCAATCCATCAGTATTGATGGGAACTTACAGCAAAAGGTCGGAAAAATTGCCATATTAGAGGCAGGTGAAGAAAT
ACACATCAAGAGCGGTGACAAAACCGTGATTGAAGCAGGAGCAGAAATCACCCTTGCCGCAGGCGGCAGCTTCGTCAAAA
TTGACGGCGGCGGTGTCCACCTAGTCGGCTCTGTTATCAACCTGAACTCTGGCGGTAGCCCAAGTGCGGGTAGTGGGTTT
TCAGGGAAGTTGCCTATATCTCCACTGGCTGAAGAACTGCCTGTTTCTAATGAGAAAGTGGAAGAAAAAAGCGCGCCTCC
GACTACACAGAAGTCCACACTTGTTATGGCTGCTGAGGAAGGTAATCCAATATGTGAAGAGTGTCAGGCGGCAGCGAACA
CATAG