Detailed information of component protein


Summary

Component ID T6CP002089
Component protein type TssF
T6SS ID (Type) T6SS00208 insolico (Type i1)
Strain Vibrio cholerae O395
Replicon chromosome I
Sequence Protein sequence (590 a.a.); Nucleotide sequence (1770 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC0395_RS00145
Coordinate (Strand) 31613..33382 (-)
NCBI ID WP_000189792.1
RefSeq NC_009456
Uniprot ID Q9KN55_VIBCH, A0A0X1L1S3_VIBCO, A0A0H3AGM9_VIBC3, A0A0K9UV54_VIBCL, A0A7U8WPY4_VIBCL, A0A0H3Q6K7_VIBCL, C3LUD4_VIBCM, A0A023PSA3_VIBCL
KEGG ID vch:VCA0110, vcq:EN18_04275, vcz:VAB027_919, vco:VC0395_0028, vcx:VAA049_1798, vcm:VCM66_A0108
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3.6e-158 5..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 590 a.a.    

>T6CP002089 NC_009456:c33382-31613 [Vibrio cholerae O395] [TssF]
MTQDKYFREELAFLKEQGKEFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVEDEFPELTHSIINMLWPNYLR
PIPSMSVVAFEPDKSVSEKQVIPRNTQLDSKPVFGTACHFNTCRDVALYPMQCQGVHAEHTREATTIQISLRMLGDMTVG
DAKLDTVRFYLGGDKYSSQTLYLWLHHYLQKMTIEVQGVEFALPADAFSTVGFSSDQALLPYPKNVYDGYRILQEYLSFP
EAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTLPADTRVRQDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYP
AHYEIFSVDQVVGWQDTQSEGKRIRGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDGFDSFISFVRGDETLSM
GVDEAVSIKLTCTNRLLPLELGVGDICVATDSSPPFATFKNITVPSQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSC
VLRAYDFRALVDRQAERVARMRLDGIVKIESKPVDKILRGLPVRGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASI
NSFHELVVVNISNQEKYSWGTQSGMQPLI*

  Nucleotide sequence: 1770 bp    

>T6CP002089 NC_009456:c33382-31613 [Vibrio cholerae O395] [TssF]
ATGACGCAAGACAAGTATTTCAGGGAAGAGCTCGCTTTTTTAAAAGAGCAGGGGAAAGAATTTACCGAAATTCACCCTCA
GCTTTCGCGTTTTCTTCATGGCCGTACGACCGATCCTGACGTTGAGCGTCTTTTGGAAGGTTTTGCATTTCTTACCGCGC
GTTTGCGCGAAAAGGTGGAGGATGAGTTCCCTGAACTTACTCACTCCATCATTAACATGCTGTGGCCAAATTATCTGCGC
CCTATCCCGAGCATGAGTGTGGTGGCGTTTGAACCTGACAAAAGTGTCAGCGAGAAGCAAGTCATCCCACGTAATACCCA
ATTGGATAGCAAGCCAGTCTTTGGCACGGCGTGTCATTTCAACACTTGCCGTGATGTCGCGCTATATCCGATGCAGTGTC
AAGGTGTTCATGCCGAGCACACACGTGAAGCCACGACCATTCAGATCTCGTTGCGCATGTTGGGCGATATGACAGTAGGC
GACGCTAAGCTCGATACCGTACGTTTTTACTTAGGTGGTGATAAATACAGCTCGCAAACTCTCTATCTTTGGTTACACCA
TTATCTACAAAAAATGACGATTGAAGTGCAGGGTGTCGAGTTCGCACTGCCTGCTGATGCGTTTTCAACCGTCGGTTTCT
CAAGTGACCAAGCTTTGCTGCCTTATCCAAAGAATGTCTATGACGGTTATCGTATTTTGCAAGAGTACCTGTCGTTTCCT
GAAGCCTTTCACTTCTTTGATGTAAAAGGTTTTGCCAAAGCTTTACCGAAAGCGGTCAGCGGTGATTTCACCTTACGCAT
CCATTTTTCGAAAACATTGCCTGCTGATACGCGAGTGCGTCAGGACAATTTTCAACTCTATTGCACACCGGTCATCAATC
TGTTTGAGCATGATGCCGATCCGATCGATTTGACTGGGCGTCGTTCAGAGTATCGAATCGTCCCGTCCAGTCGCTATCCT
GCCCACTATGAAATTTTCAGCGTGGATCAAGTGGTTGGTTGGCAAGATACCCAGTCAGAAGGCAAACGGATCCGCGGAGA
AAAGCGTATCTACTCTTCTTTTGAAAGCTTCCAACATGAAGTGGAACGGGTTCGTCATCGTCAAGCGCTTTACTATCGCA
CACGAGTCAAAGAGAGCATCCGGGGGGATGGTTTTGATTCATTTATCTCTTTTGTGCGCGGTGATGAAACCTTATCAATG
GGCGTAGATGAAGCCGTCTCAATCAAACTCACCTGCACCAATCGCTTGCTGCCATTGGAACTTGGGGTGGGGGATATTTG
TGTGGCGACCGACAGCTCACCCCCTTTTGCCACATTCAAAAATATTACGGTGCCTTCGCAGTCACTGCGCCCGGTTCTCG
ATGGCAGCTTACTGTGGACGCTGATCTCGAATCTATCGCTGAACTACCTATCACTGCTCTCAAAAGATGCACTGAGCTGT
GTGCTACGCGCTTACGATTTTCGCGCCTTGGTCGATAGGCAAGCTGAACGTGTCGCACGGATGCGCCTTGATGGCATAGT
CAAAATAGAATCTAAACCGGTTGATAAAATCCTACGTGGTTTGCCTGTGCGTGGTTTGCAATCGACTTTGTATGTCGATC
AAGCGGGATTTGGCTCGGAAGGTGATTTGTTCCTGTTTGGTACGGTACTCAGTCATTTCTTTGCACTTTACGCCAGCATC
AACTCATTTCACGAATTAGTCGTGGTTAACATCAGCAATCAAGAGAAGTACTCATGGGGCACACAGAGCGGAATGCAGCC
GTTGATCTGA