Detailed information of component protein


Summary

Component ID T6CP002088
Component protein type TssG
T6SS ID (Type) T6SS00208 insolico (Type i1)
Strain Vibrio cholerae O395
Replicon chromosome I
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC0395_RS00140
Coordinate (Strand) 30633..31649 (-)
NCBI ID WP_000510174.1
RefSeq NC_009456
Uniprot ID A0A366AU28_9VIBR, A0A023PSD2_VIBCL
KEGG ID vcx:VAA049_1797
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.4e-88 28..324
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 339 a.a.    

>T6CP002088 NC_009456:c31649-30633 [Vibrio cholerae O395] [TssG]
MGHTERNAAVDLNSDPAQASPLSLPGNVREYNFYQLVELLQKLADINPESEEWERDCRLVFSANPSLGFSPSDVMALEAR
DDDRWVMLTNFFGLSGAQSPLPGFILEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFA
LVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMD
TVIGESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREAPLFCLDAKQNIALGWT
SFLGQDAANKHVLIQVRQ*

  Nucleotide sequence: 1017 bp    

>T6CP002088 NC_009456:c31649-30633 [Vibrio cholerae O395] [TssG]
ATGGGGCACACAGAGCGGAATGCAGCCGTTGATCTGAATTCAGATCCAGCGCAAGCCTCTCCCTTGAGCTTGCCGGGCAA
TGTACGGGAATACAACTTCTACCAACTGGTTGAGCTGTTGCAAAAACTGGCTGATATCAATCCTGAATCGGAAGAGTGGG
AGCGCGATTGCCGCTTGGTGTTCAGTGCTAACCCGAGCCTTGGATTTTCGCCTAGTGATGTGATGGCGCTTGAAGCGCGT
GACGATGATCGCTGGGTTATGTTGACCAACTTTTTTGGCCTTTCCGGTGCACAGTCACCTCTGCCGGGGTTCATCCTTGA
GCAATTGGTGACGGAAGAGCCTGGGGGGTATAAGCAGCCGTTTCTCGATTTTTTCAATAACCGATTGATTAATTTGGTTT
ATCGCGTTTGGCGTAAATACCGTTACTACGTACGTTTTCAGCCCGGTGCGCAGGATGTGTTCTCTGCACAGCTGTTTGCG
CTGGTGGGGTTGGGCGATCCTGACCTTCGCGGTGAAACGCCGATCAACTGGTGCAAAATGCTGGCTTACGCGGGCACGCT
GGCCGGACGTAGCCGTTCGCCACAAGTCGTGGCCGGCATTATTGCTCACTGTTTTGATTTACCGGATGTCTCCATTCGCC
AGTGGGTCAGACGTCGGGTATCGATTGACCGGAGTCAGCAACTGGCGCTGGGCAAGCAGAATGCGCGGTTGGGGATGGAC
ACGGTGATTGGCGAGTCCGTTATTGATTGTAGTGGAAAATTTATTATCTGTATCAAACGGTTATCTCGCAGTCGTTTTGC
TGATTTTTTGCCCTCCGGTAAAGAGTATCAGCCACTTTGCAAGCTGGTGGAGTTTATTTTGCGCGAACAGATGGCGTACG
ACCTCGAGCTGGCGATGGATGAACGGGAAGCGCCGCTGTTTTGTCTGGATGCGAAACAGAATATCGCCCTCGGCTGGACT
TCGTTTCTTGGCCAAGATGCAGCCAATAAACATGTGTTAATTCAAGTAAGGCAATAA