Detailed information of component protein


Summary

Component ID T6CP002084
Component protein type TssL
T6SS ID (Type) T6SS00208 insolico (Type i1)
Strain Vibrio cholerae O395
Replicon chromosome I
Sequence Protein sequence (258 a.a.); Nucleotide sequence (774 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) VC0395_RS00120
Coordinate (Strand) 26545..27318 (-)
NCBI ID WP_000083409.1
RefSeq NC_009456
Uniprot ID Q9KN50_VIBCH, A0A0X1L1V7_VIBCO, A0A0H3ADB8_VIBC3, A0A0K9UV49_VIBCL, A0A7U8WPX0_VIBCL, A0A0H3Q6L3_VIBCL, C3LUD9_VIBCM, A0A023PRL8_VIBCL
KEGG ID vcm:VCM66_A0113, vcq:EN18_04300, vco:VC0395_0022, vch:VCA0115
PDB ID 4V3I

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 2.2e-61 39..240

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 258 a.a.    

>T6CP002084 NC_009456:c27318-26545 [Vibrio cholerae O395] [TssL]
MSQSKKETPLASLLFDDVEKINHDQDYWFQLRGDNPNVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIEL
TEQGYEHAILMAYRYILCAFLDESVMGTEWGASSLWAEHSMLSRFHNETWGGEKVFTILSRLEGEPHRYQALLAFIYHCL
ILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLTRPTDHVVRAKYTLSRQMPVWSVFAGFIVLWVGLFLGYSY
VLHSKSSDVLNQLNQIL*

  Nucleotide sequence: 774 bp    

>T6CP002084 NC_009456:c27318-26545 [Vibrio cholerae O395] [TssL]
ATGTCACAGAGTAAAAAAGAGACGCCATTAGCCAGTTTGTTGTTCGACGATGTGGAAAAAATTAACCACGACCAAGACTA
CTGGTTCCAATTGCGTGGGGACAATCCGAATGTGCTGATTGATGCCGCGACACCCTTGTTTGGGCTTTCTCTGCGGGTTC
GTACCCTCACCGAATGCGACAACATTGAACAGATCTACCGTCAGACGATTGAAGAGATCAAAGCGATTGAAATTGAGTTG
ACGGAGCAAGGTTACGAACACGCCATTTTGATGGCCTATCGCTACATCTTGTGCGCCTTTTTGGATGAATCCGTGATGGG
AACCGAGTGGGGCGCGTCCAGTTTATGGGCCGAGCACTCCATGCTGTCACGCTTCCATAATGAAACGTGGGGTGGCGAGA
AAGTGTTTACGATTTTGAGCCGTCTTGAGGGTGAACCACACCGTTACCAAGCGCTATTGGCCTTTATTTATCATTGCCTG
ATTTTGGGCTTTGAAGGCAAATACCGTGTGATGGAAGGGGGACAAGCTGAGCGCGAAAAAGTGATCAGCCGCCTGCATCA
ACTGCTGAGCAGCTTGGAAGAGAGCGAGCCACAAGACTTAACCCGTCCGACCGATCATGTGGTGCGTGCGAAATATACCC
TAAGCAGACAGATGCCTGTTTGGTCTGTGTTTGCTGGCTTTATCGTGCTTTGGGTAGGTCTATTTCTCGGCTACAGCTAT
GTACTGCATAGCAAATCCAGCGATGTGCTCAATCAACTCAATCAAATACTTTAA