Detailed information of component protein


Summary

Component ID T6CP001613
Component protein type TssF
T6SS ID (Type) T6SS00164 experimental (Type i3)
Strain Acidovorax citrulli AAC00-1
Replicon chromosome
Sequence Protein sequence (625 a.a.); Nucleotide sequence (1875 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AAVE_RS07355
Coordinate (Strand) 1637101..1638975 (+)
NCBI ID WP_011794621.1
RefSeq NC_008752
Uniprot ID A1TM83_ACIAC
KEGG ID aav:Aave_1480
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.7e-224 1..621

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-624 MNPRLVEYYNRELSYLRELGAEFAAAFPKVAGRLSLRELEVADPYVERLLEGFSFLTARIQMKMDAEFPRLSQRILEMVCPHYLAPTPSMVVVQMEPSGTEGSLVEGYTLEAGSVIRGRKTAEDQTPCDFRTGHAVTLWPIDLQQARLGGPPLDLPLSRFGLAEEAAGHLRFTLSVRGAAQWRNLRMDRLDLHISAGDAVASHLQELIHESVMGVIVHDPQDASRVWAQLPAESVQPEGYEQSQALLPYTHRAFQGHRLLHEYFAFPARFRFFSIRGLREALDRVPGPQVGITLLLRRAQPTLEAQVDRNKFLLHCVPAINLFERPADRIHVSPGVSEYHVVPDRTRPRDFEVYSILGVTGHREGQLKDQDFLPFFASVHGLRASEQAYFAVRREPRLFSEHATRFGPRTQYLGSEVFISLVDQRAAPFADDLKQLSVRTLCTNRDLPLLMGGKGEQSDFSLVESAPVASVRTVAGPTRPTASIAENEMTWRLISHLSLNYLAMSDLSEEEGAATLRDLLRLYIDHGDRDLSGQIAAIRSLAIAPVTRRLPQHGQLVYGRGVGITLGVDEGPLAGVSPWPLASILERFFARHVGVNSYTELSLRSRQRGAVARWKVRPGQRPAA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9939 - -



  Protein sequence: 625 a.a.    

>T6CP001613 NC_008752:1637101-1638975 [Acidovorax citrulli AAC00-1] [TssF]
MNPRLVEYYNRELSYLRELGAEFAAAFPKVAGRLSLRELEVADPYVERLLEGFSFLTARIQMKMDAEFPRLSQRILEMVC
PHYLAPTPSMVVVQMEPSGTEGSLVEGYTLEAGSVIRGRKTAEDQTPCDFRTGHAVTLWPIDLQQARLGGPPLDLPLSRF
GLAEEAAGHLRFTLSVRGAAQWRNLRMDRLDLHISAGDAVASHLQELIHESVMGVIVHDPQDASRVWAQLPAESVQPEGY
EQSQALLPYTHRAFQGHRLLHEYFAFPARFRFFSIRGLREALDRVPGPQVGITLLLRRAQPTLEAQVDRNKFLLHCVPAI
NLFERPADRIHVSPGVSEYHVVPDRTRPRDFEVYSILGVTGHREGQLKDQDFLPFFASVHGLRASEQAYFAVRREPRLFS
EHATRFGPRTQYLGSEVFISLVDQRAAPFADDLKQLSVRTLCTNRDLPLLMGGKGEQSDFSLVESAPVASVRTVAGPTRP
TASIAENEMTWRLISHLSLNYLAMSDLSEEEGAATLRDLLRLYIDHGDRDLSGQIAAIRSLAIAPVTRRLPQHGQLVYGR
GVGITLGVDEGPLAGVSPWPLASILERFFARHVGVNSYTELSLRSRQRGAVARWKVRPGQRPAA*

  Nucleotide sequence: 1875 bp    

>T6CP001613 NC_008752:1637101-1638975 [Acidovorax citrulli AAC00-1] [TssF]
ATGAATCCGCGGCTGGTCGAGTACTACAACCGGGAGCTGAGCTACCTGCGCGAACTGGGCGCGGAGTTCGCTGCCGCCTT
CCCGAAAGTCGCCGGGCGGCTGTCGCTGCGCGAGCTGGAGGTGGCCGATCCCTACGTGGAGCGGCTGCTCGAGGGCTTCA
GCTTCCTCACGGCACGCATCCAGATGAAGATGGACGCGGAGTTTCCGCGTCTCTCGCAGCGCATCCTGGAGATGGTCTGT
CCCCATTACCTGGCCCCGACGCCGTCGATGGTGGTCGTGCAGATGGAGCCCAGCGGCACGGAGGGCAGCCTGGTCGAAGG
CTACACCCTGGAGGCCGGCAGCGTGATCCGCGGGCGCAAGACCGCGGAAGACCAGACGCCGTGCGATTTCCGCACCGGAC
ATGCGGTCACGCTCTGGCCCATCGATCTGCAGCAGGCCCGCCTGGGCGGGCCGCCGCTGGACCTGCCGCTGTCGCGTTTC
GGACTGGCGGAAGAGGCTGCCGGCCATCTGCGTTTCACGCTGTCGGTGCGCGGCGCCGCGCAGTGGCGCAACCTGCGCAT
GGACCGGCTCGACCTGCACATCTCCGCGGGGGACGCCGTGGCGTCGCACCTGCAGGAGCTGATCCACGAGTCCGTCATGG
GCGTCATCGTCCACGATCCGCAGGACGCATCCAGGGTCTGGGCCCAGTTGCCGGCGGAGTCCGTGCAGCCGGAGGGGTAC
GAGCAGTCCCAGGCCCTGCTGCCCTACACCCACCGGGCATTCCAGGGGCACCGGCTGCTGCACGAGTATTTCGCCTTTCC
CGCGCGGTTCCGCTTTTTCTCGATCCGGGGGCTGCGGGAGGCGCTCGACCGCGTGCCGGGCCCGCAGGTCGGCATCACGC
TGCTGCTGCGGCGCGCGCAGCCCACGCTGGAAGCGCAGGTGGACCGCAACAAATTTCTCCTGCACTGCGTGCCGGCGATC
AATTTGTTCGAACGCCCGGCCGACCGCATCCACGTGTCCCCGGGCGTCAGCGAATACCACGTGGTGCCGGACCGGACGCG
GCCGCGCGATTTCGAGGTCTATTCGATTCTCGGCGTGACAGGCCACCGGGAGGGGCAGCTCAAGGACCAGGATTTCCTGC
CGTTCTTCGCGTCGGTGCACGGCCTGCGCGCGAGCGAACAGGCCTATTTCGCCGTGCGCAGGGAGCCGCGCCTGTTCTCG
GAGCATGCCACGCGTTTCGGGCCGCGCACCCAGTATCTGGGCAGCGAGGTTTTCATCTCGCTGGTGGACCAGAGGGCAGC
GCCGTTCGCGGACGACCTCAAGCAGCTCAGCGTGCGGACGCTGTGCACCAACCGCGACCTGCCGCTGCTCATGGGGGGCA
AGGGCGAGCAGAGCGACTTCAGCCTGGTGGAGTCCGCGCCCGTGGCCTCGGTGCGCACGGTGGCCGGCCCGACGCGGCCC
ACGGCCAGCATCGCCGAGAACGAGATGACCTGGCGGCTGATCTCGCACTTGTCCCTCAACTACCTGGCGATGAGCGACCT
GTCGGAGGAAGAGGGCGCGGCGACGCTGCGCGATCTGCTGCGGCTCTACATCGACCACGGGGACCGCGACCTGTCCGGGC
AGATCGCGGCGATCCGGTCGCTGGCGATCGCGCCGGTCACGCGCCGGCTGCCCCAGCACGGGCAACTGGTCTATGGCCGC
GGCGTGGGCATCACCCTGGGCGTGGACGAAGGGCCGCTCGCGGGCGTGAGCCCCTGGCCCCTCGCGTCGATCCTGGAGCG
CTTCTTCGCCCGCCATGTGGGTGTCAACAGCTATACCGAACTGTCGCTGCGGTCGCGGCAGCGGGGGGCGGTAGCGCGCT
GGAAGGTGCGCCCCGGCCAGAGGCCCGCGGCATGA