Detailed information of component protein


Summary

Component ID T6CP001609
Component protein type TssA
T6SS ID (Type) T6SS00164 experimental (Type i3)
Strain Acidovorax citrulli AAC00-1
Replicon chromosome
Sequence Protein sequence (347 a.a.); Nucleotide sequence (1041 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AAVE_RS07330
Coordinate (Strand) 1632316..1633356 (+)
NCBI ID WP_011794616.1
RefSeq NC_008752
Uniprot ID A1TM78_ACIAC
KEGG ID aav:Aave_1475
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 8.8e-36 8..128

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-346 MIDIEELLEPTADTPPCGPDLTYDAEFLALETAATGKPEQQFGDTVIPAEPPDWRDVERRARALLVRTKDARVAALLCRALTNVQGVRGMSQGVQLMAWMFARYWDGLHPLPEDGDHFMRMNAVSSLNEITGQLRDLRQQDFVRLPGGTISVRDAESVARGATAEGGLRISLDQLRVALAQAWQQGDESLRAWSTASEALRSLQTTFRDRLESTQVPDLEQFQSLLVVLNDLVPHAPIGMADAAAASPEEGAVPGAGAVPAGGVAAGDAGGVAARPAGIRTRDDALAQLLLVAEFLERTEPTNPAPLLIRRAAKLMGLSFLDILRELSPDSVSQVETITGGQNPPS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9923 - -



  Protein sequence: 347 a.a.    

>T6CP001609 NC_008752:1632316-1633356 [Acidovorax citrulli AAC00-1] [TssA]
MIDIEELLEPTADTPPCGPDLTYDAEFLALETAATGKPEQQFGDTVIPAEPPDWRDVERRARALLVRTKDARVAALLCRA
LTNVQGVRGMSQGVQLMAWMFARYWDGLHPLPEDGDHFMRMNAVSSLNEITGQLRDLRQQDFVRLPGGTISVRDAESVAR
GATAEGGLRISLDQLRVALAQAWQQGDESLRAWSTASEALRSLQTTFRDRLESTQVPDLEQFQSLLVVLNDLVPHAPIGM
ADAAAASPEEGAVPGAGAVPAGGVAAGDAGGVAARPAGIRTRDDALAQLLLVAEFLERTEPTNPAPLLIRRAAKLMGLSF
LDILRELSPDSVSQVETITGGQNPPS*

  Nucleotide sequence: 1041 bp    

>T6CP001609 NC_008752:1632316-1633356 [Acidovorax citrulli AAC00-1] [TssA]
ATGATCGACATCGAAGAGCTTCTTGAACCCACGGCGGACACGCCGCCCTGCGGGCCGGATCTCACCTACGACGCGGAGTT
CCTGGCCCTGGAGACCGCGGCCACCGGCAAGCCGGAGCAGCAGTTCGGGGACACGGTGATCCCCGCCGAGCCACCGGACT
GGCGCGACGTGGAGCGCCGCGCGCGCGCGCTGCTCGTCCGCACGAAGGATGCGCGCGTCGCGGCCTTGCTGTGCCGGGCA
CTGACCAACGTCCAGGGCGTGCGCGGCATGTCGCAGGGCGTGCAGCTGATGGCCTGGATGTTCGCCCGTTACTGGGACGG
CCTGCATCCGCTGCCCGAGGATGGCGACCACTTCATGCGCATGAACGCCGTGTCGTCGCTCAACGAGATCACGGGCCAGC
TGCGCGACCTCCGCCAGCAGGACTTCGTGCGCCTGCCCGGCGGCACCATCAGCGTGCGGGACGCGGAGTCGGTGGCGCGG
GGGGCGACCGCCGAGGGCGGCCTGCGGATATCGCTCGATCAGTTGCGGGTGGCGCTGGCGCAGGCATGGCAGCAGGGCGA
TGAGTCGCTGCGGGCCTGGAGCACGGCCAGCGAAGCGCTGCGCAGCCTGCAGACGACGTTCCGCGACCGGCTGGAAAGCA
CGCAGGTGCCGGACCTGGAGCAGTTCCAGTCGCTGCTGGTGGTCCTGAACGACCTGGTGCCGCATGCGCCCATCGGCATG
GCCGATGCCGCCGCGGCATCGCCGGAGGAAGGGGCCGTTCCTGGCGCCGGCGCCGTTCCGGCGGGAGGTGTCGCGGCCGG
CGATGCCGGCGGGGTAGCCGCCAGGCCGGCAGGGATCAGGACCCGCGACGACGCGCTGGCACAACTGCTGCTGGTGGCCG
AATTCCTGGAGCGCACCGAGCCCACCAATCCGGCGCCGCTGCTGATCCGCCGCGCGGCCAAGCTGATGGGCCTCAGTTTC
CTCGACATCCTGAGGGAGCTTTCTCCAGACAGCGTCAGCCAGGTCGAGACGATCACGGGAGGACAAAATCCGCCATCCTG
A