Detailed information of component protein


Summary

Component ID T6CP001607
Component protein type TssL
T6SS ID (Type) T6SS00164 experimental (Type i3)
Strain Acidovorax citrulli AAC00-1
Replicon chromosome
Sequence Protein sequence (451 a.a.); Nucleotide sequence (1353 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AAVE_RS07315
Coordinate (Strand) 1626589..1627941 (+)
NCBI ID WP_085947483.1
RefSeq NC_008752
Uniprot ID UPI00088B6737
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.3e-67 49..251
OmpA PF00691.22 2e-16 316..414
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-228 MQNSVNVFAAGHPGQPAGAMPASAPPGGTGAEPGTKPSGLPDVVSGGNPLVAAANTLLNLIPQIRRMATNPDPAAFQHYLLECIRHFESRAGGAGVPMETIIGARYCICTAIDEAAAQTPWGGSGVWPQYSLLVALHNETWGGEKFFQLLSKLVQTPHQHIDLIELMYFCLMLGFEGRYHVIDNGRSQLESLKARLLQVIESTRGDRSGALSLHWRGVQRAAVPPWSL
Transmembrane helix 229-251 VPFWVAAALTLLIGFLIFLWFNY
Inside 252-450 RLASRSDELFAAINAIRLPKMPSVVAVAPPKPRLRQFLEPEIREGLVEVNDQADRSIVTLRGDGLFDPASTEVKPRYVAVIQRIASALNEVSGKVVVNGYSDNQPIRTARFPSNWHLSQERAQAVAAMLQRTIADGSRLRAEGRAESDPIAPNSTPEGRALNRRVEIVLMVPPQARDAELQLTPGPAAAGTPAPGNPKN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6014 - -


  Protein sequence: 451 a.a.    

>T6CP001607 NC_008752:1626589-1627941 [Acidovorax citrulli AAC00-1] [TssL]
MQNSVNVFAAGHPGQPAGAMPASAPPGGTGAEPGTKPSGLPDVVSGGNPLVAAANTLLNLIPQIRRMATNPDPAAFQHYL
LECIRHFESRAGGAGVPMETIIGARYCICTAIDEAAAQTPWGGSGVWPQYSLLVALHNETWGGEKFFQLLSKLVQTPHQH
IDLIELMYFCLMLGFEGRYHVIDNGRSQLESLKARLLQVIESTRGDRSGALSLHWRGVQRAAVPPWSLVPFWVAAALTLL
IGFLIFLWFNYRLASRSDELFAAINAIRLPKMPSVVAVAPPKPRLRQFLEPEIREGLVEVNDQADRSIVTLRGDGLFDPA
STEVKPRYVAVIQRIASALNEVSGKVVVNGYSDNQPIRTARFPSNWHLSQERAQAVAAMLQRTIADGSRLRAEGRAESDP
IAPNSTPEGRALNRRVEIVLMVPPQARDAELQLTPGPAAAGTPAPGNPKN*

  Nucleotide sequence: 1353 bp    

>T6CP001607 NC_008752:1626589-1627941 [Acidovorax citrulli AAC00-1] [TssL]
ATGCAGAACTCCGTCAACGTTTTCGCCGCCGGCCATCCGGGCCAGCCCGCCGGGGCCATGCCCGCGTCCGCACCTCCCGG
CGGCACCGGTGCCGAGCCCGGCACCAAGCCGTCGGGCCTGCCCGATGTCGTGAGCGGCGGCAATCCGCTCGTGGCCGCGG
CCAATACCCTGCTGAACCTCATTCCGCAGATCCGCCGCATGGCGACCAATCCCGATCCCGCGGCATTCCAGCACTACCTG
CTCGAATGCATCCGGCATTTCGAGAGCCGGGCGGGCGGCGCGGGCGTGCCGATGGAAACCATCATCGGCGCGCGCTACTG
CATCTGCACCGCGATCGACGAGGCGGCGGCCCAGACACCGTGGGGCGGTTCGGGCGTCTGGCCGCAGTACAGCCTGCTCG
TGGCGCTGCACAACGAAACCTGGGGCGGGGAGAAGTTCTTCCAGCTGCTGTCCAAGCTGGTCCAGACGCCCCACCAGCAC
ATCGACCTCATCGAGCTCATGTACTTCTGCCTGATGCTCGGCTTCGAGGGACGCTATCACGTCATCGACAACGGGCGCAG
CCAGCTCGAGAGCCTGAAGGCCCGGCTGCTGCAGGTGATCGAGAGCACCCGCGGGGACCGCAGCGGGGCGCTGTCCCTGC
ACTGGCGCGGCGTGCAGCGCGCGGCGGTGCCGCCCTGGAGCCTGGTGCCGTTCTGGGTGGCGGCCGCGCTGACCCTGCTC
ATCGGCTTCCTGATCTTCCTCTGGTTCAACTACCGGCTGGCATCGCGCTCGGACGAGCTGTTCGCCGCGATCAATGCCAT
CCGCCTGCCGAAGATGCCCTCCGTGGTGGCCGTGGCGCCACCGAAGCCGCGCCTGCGCCAGTTCCTGGAGCCCGAGATCC
GCGAAGGCCTGGTCGAGGTGAACGACCAGGCGGACCGCAGCATCGTGACCCTGCGCGGAGATGGCCTGTTCGATCCAGCG
TCCACCGAAGTCAAGCCGCGCTATGTCGCGGTGATCCAGCGCATCGCGTCCGCGCTCAACGAAGTGTCCGGCAAGGTGGT
CGTGAACGGCTATTCCGACAACCAGCCGATCCGCACGGCACGCTTCCCTTCGAACTGGCACCTGTCGCAGGAGCGGGCCC
AGGCCGTCGCGGCCATGCTGCAGAGGACCATCGCCGACGGGTCCCGCCTGCGGGCCGAAGGCCGTGCCGAAAGCGACCCG
ATCGCCCCCAACAGCACGCCGGAAGGCCGGGCGCTGAACCGCCGGGTGGAGATCGTGCTGATGGTCCCGCCCCAGGCCCG
CGATGCCGAGCTGCAGCTGACTCCCGGCCCGGCTGCGGCCGGCACGCCCGCCCCCGGCAATCCGAAGAACTAA