Detailed information of component protein


Summary

Component ID T6CP001606
Component protein type TssK
T6SS ID (Type) T6SS00164 experimental (Type i3)
Strain Acidovorax citrulli AAC00-1
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AAVE_RS07310
Coordinate (Strand) 1625240..1626574 (+)
NCBI ID WP_011794612.1
RefSeq NC_008752
Uniprot ID A1TM74_ACIAC
KEGG ID aav:Aave_1471
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.5e-158 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MVWQRKVVWAEGMFLRPQHFQQQDRYTDFLVQARTLPAQFFFWGFSKLALDTELLGLGKLGLLSGEGVLPDGTPFSFPHHDQAPAALAIGKDVKDTVIHLALPMRRRAGAEVTLGAPGGASVRYAAEVAEVPDVNDMGAQAAEVQIGNIQLSLRAAQDVTDGWVSLPVAQVVERRADGSLLLDPSFIPTVVNNSEMSGLATYCRELFGLLRQRGAALEERLSQPGRGGVGEVGDFLMLQFLNRWEPAVEHWVRVRAIHPERLFDDLLKMAGELATFTREQRRPAAMPTYDHDDLRSCFLPLMLELRRGLSSVLEQNAIQIELQERQYGVHVALIPSTELLTSCDFVLAVHAQTAVEFLRAHFPTQIKMGPVERIRDLVNLHLPGVPLRSLPVAPREIPYHAGYSYFELDTGHDLWRQLQNSGGLALHVSGGFPELQLEMWAIRR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -


  Protein sequence: 445 a.a.    

>T6CP001606 NC_008752:1625240-1626574 [Acidovorax citrulli AAC00-1] [TssK]
MVWQRKVVWAEGMFLRPQHFQQQDRYTDFLVQARTLPAQFFFWGFSKLALDTELLGLGKLGLLSGEGVLPDGTPFSFPHH
DQAPAALAIGKDVKDTVIHLALPMRRRAGAEVTLGAPGGASVRYAAEVAEVPDVNDMGAQAAEVQIGNIQLSLRAAQDVT
DGWVSLPVAQVVERRADGSLLLDPSFIPTVVNNSEMSGLATYCRELFGLLRQRGAALEERLSQPGRGGVGEVGDFLMLQF
LNRWEPAVEHWVRVRAIHPERLFDDLLKMAGELATFTREQRRPAAMPTYDHDDLRSCFLPLMLELRRGLSSVLEQNAIQI
ELQERQYGVHVALIPSTELLTSCDFVLAVHAQTAVEFLRAHFPTQIKMGPVERIRDLVNLHLPGVPLRSLPVAPREIPYH
AGYSYFELDTGHDLWRQLQNSGGLALHVSGGFPELQLEMWAIRR*

  Nucleotide sequence: 1335 bp    

>T6CP001606 NC_008752:1625240-1626574 [Acidovorax citrulli AAC00-1] [TssK]
ATGGTTTGGCAGCGCAAGGTCGTCTGGGCCGAAGGGATGTTCCTTCGCCCGCAGCATTTCCAGCAACAGGACCGCTACAC
CGATTTCCTCGTGCAGGCCCGCACGTTGCCGGCCCAGTTCTTCTTCTGGGGCTTCTCCAAGCTGGCGCTCGATACGGAGC
TGCTGGGGCTGGGCAAGCTGGGCCTGCTGTCCGGAGAGGGCGTGCTGCCGGACGGCACGCCGTTCAGCTTTCCGCACCAT
GACCAGGCGCCCGCCGCGCTGGCGATCGGCAAGGACGTCAAGGACACGGTCATCCACCTGGCCCTGCCGATGCGGCGCAG
GGCCGGCGCGGAGGTGACGCTGGGCGCGCCCGGCGGCGCTTCGGTGCGCTATGCGGCCGAGGTGGCGGAAGTCCCGGACG
TCAACGACATGGGCGCCCAGGCGGCCGAGGTGCAGATCGGGAACATCCAGCTGTCGCTGCGCGCCGCGCAGGACGTCACC
GACGGATGGGTGAGCCTGCCCGTGGCCCAGGTGGTGGAGCGCAGGGCGGACGGATCGCTGCTGCTGGATCCGTCCTTCAT
TCCCACGGTGGTCAACAATTCCGAGATGTCGGGGCTGGCCACCTACTGCCGCGAGCTCTTCGGCCTGCTGCGGCAGCGGG
GCGCGGCGCTGGAAGAGCGACTGAGCCAGCCCGGACGGGGCGGCGTGGGGGAGGTCGGCGATTTCCTGATGCTGCAGTTC
CTGAACCGCTGGGAGCCGGCGGTGGAGCACTGGGTGCGCGTGCGGGCCATCCACCCCGAGCGGCTGTTCGACGATCTGCT
GAAGATGGCCGGCGAACTGGCGACGTTCACGCGCGAGCAGCGCCGGCCCGCGGCCATGCCGACCTACGACCACGACGATC
TGCGCAGCTGCTTCCTGCCCCTGATGCTCGAATTGCGCCGGGGGCTCTCCTCGGTGCTGGAACAGAACGCGATCCAGATC
GAGTTGCAGGAACGCCAGTACGGCGTCCACGTGGCGCTCATCCCGAGCACGGAACTGCTCACCAGCTGCGACTTCGTGCT
GGCGGTGCATGCGCAGACCGCCGTGGAGTTCCTGCGGGCGCATTTCCCCACGCAGATCAAGATGGGGCCCGTGGAACGCA
TCCGCGACCTCGTGAACCTGCACCTGCCCGGCGTGCCGTTGCGTTCGCTGCCGGTCGCGCCGCGCGAGATCCCTTACCAC
GCGGGCTATTCCTACTTCGAGCTGGACACGGGACACGACCTGTGGCGCCAGTTGCAGAACTCGGGCGGCCTGGCGCTGCA
CGTCTCGGGAGGCTTCCCTGAGCTGCAGCTCGAAATGTGGGCCATACGGCGCTGA