Detailed information of component protein


Summary

Component ID T6CP001521
Component protein type TssF
T6SS ID (Type) T6SS00155 insolico (Type i1)
Strain Escherichia coli APEC O1
Replicon chromosome
Sequence Protein sequence (614 a.a.); Nucleotide sequence (1842 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) APECO1_RS01200
Coordinate (Strand) 258725..260566 (-)
NCBI ID WP_000863402.1
RefSeq NC_008563
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 9.3e-123 6..609
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 614 a.a.    

>T6CP001521 NC_008563:c260566-258725 [Escherichia coli APEC O1] [TssF]
VAFEERYYREELDYLRQLGKLLAQEKPHLAHFLAEKEGDPDVERLMEAFAFMSGSLRQKLEDEFPEFTHGLIRMLWANYL
RPVPAMTVIAYEPKTDQLKVPVQVCRNELIRSRSEKSSLTAQKVLPDNHDKIVSSVACHFTLARDIWLQPLRILDTRNAS
SLKEGIIDISFTADNNVSPAMLDLNKITFWLGNEDDYTRHQLYLWFCECLMDAELIAGEYRLPLPDLWLEAAGFDNRDAL
LPWPKNVHSGYRVLQEYFCYPEAFFFFHLRDVAPLPDDFPINAFTLRLHFNRPLPADIKLRQDSLRLHCTPAINLFTHYA
EPVRPDGRMAEYPLRASHKHPDAYDIFQVSTVTSKVKVSGTEISPGSQARVWPEFESFQHQMEYSRQREVVYWHHRTKTS
LLHHGLEHSIAFVHADGSIPGSSRFNDDVITTSLICTNRMIPARLHTGDICVAVNKNPAVASFRNVTRPTLPLWPVTDGD
MHWSLISAMNLNYLSLLDRETLIQILRTFDLPGAHHPQRARLSRQKLDAIEKLETKPVDRLFKGVPVRGLATTLWIRPDP
FICEGEIYLLGTVLSHFFALYASINSYHCLKIINTESQESWEWQEKMGQHALI*

  Nucleotide sequence: 1842 bp    

>T6CP001521 NC_008563:c260566-258725 [Escherichia coli APEC O1] [TssF]
GTGGCTTTTGAAGAACGTTACTACCGCGAAGAGCTGGATTATCTTCGCCAGCTAGGCAAACTGCTGGCGCAGGAAAAACC
ACATCTGGCCCACTTTCTGGCCGAGAAAGAGGGTGATCCGGACGTGGAGCGTCTGATGGAAGCCTTTGCCTTTATGTCCG
GTAGCCTGCGCCAGAAACTTGAGGACGAATTCCCCGAGTTCACCCATGGGCTGATCCGTATGCTGTGGGCAAACTATTTA
CGCCCGGTTCCGGCCATGACGGTTATTGCCTATGAACCCAAAACCGATCAGTTAAAAGTCCCTGTTCAGGTCTGTCGTAA
TGAACTGATCAGAAGCCGCTCAGAAAAGTCCTCCCTGACTGCTCAGAAGGTGCTGCCTGACAATCATGATAAAATCGTTT
CTTCCGTAGCCTGCCATTTCACGCTGGCGCGCGATATCTGGCTGCAACCACTGCGCATTCTCGATACCCGCAACGCCAGC
AGCCTGAAAGAAGGCATCATAGATATCAGTTTTACCGCAGATAACAATGTCTCCCCCGCCATGCTTGACCTGAACAAAAT
CACGTTCTGGCTGGGTAATGAAGACGATTATACCCGACACCAGCTTTATCTGTGGTTTTGCGAATGCCTGATGGATGCGG
AACTGATTGCCGGAGAGTACCGCCTGCCGCTGCCGGATCTGTGGCTGGAGGCGGCGGGTTTTGACAACCGGGATGCTCTG
CTGCCGTGGCCGAAAAATGTCCACAGCGGCTACCGCGTGCTTCAGGAGTATTTCTGCTATCCCGAAGCCTTCTTCTTTTT
CCATCTGCGCGATGTTGCGCCGCTACCAGACGATTTCCCGATCAATGCGTTTACGCTGCGCCTGCACTTTAACCGCCCGT
TACCTGCCGACATCAAGCTGCGCCAGGATTCGCTGCGTCTGCACTGTACGCCAGCCATTAACCTGTTTACGCATTATGCG
GAACCCGTCAGGCCGGATGGGCGGATGGCGGAATACCCGCTGCGCGCCAGCCATAAGCATCCGGACGCCTATGACATTTT
TCAGGTCAGCACAGTCACCAGTAAAGTCAAAGTTTCAGGTACTGAAATCAGCCCAGGTAGCCAGGCGCGTGTCTGGCCCG
AATTTGAAAGCTTCCAGCACCAGATGGAGTACAGCCGCCAGCGAGAAGTCGTCTACTGGCATCACCGGACTAAAACGTCC
CTGCTTCACCACGGGCTTGAACACTCTATCGCCTTTGTCCATGCAGACGGTAGCATTCCGGGCAGCTCACGGTTTAACGA
TGACGTGATCACCACGTCATTAATCTGTACCAACCGTATGATCCCTGCCCGGCTGCATACCGGTGATATCTGCGTGGCCG
TCAACAAAAATCCGGCAGTGGCCTCATTTCGTAATGTCACGCGCCCGACACTGCCGCTCTGGCCAGTCACGGACGGCGAC
ATGCACTGGTCGCTGATTTCCGCGATGAACCTGAACTACCTCTCCCTGCTGGACAGGGAGACACTGATCCAGATCCTGCG
GACCTTCGACCTGCCAGGTGCTCACCATCCGCAGCGGGCCAGACTGTCACGCCAGAAACTGGATGCCATAGAAAAACTCG
AAACCAAACCTGTTGACAGGTTGTTTAAAGGCGTACCGGTTCGCGGGCTGGCGACCACGCTGTGGATACGTCCCGATCCG
TTTATCTGCGAAGGTGAAATTTATCTTCTGGGTACCGTGCTCTCGCACTTCTTTGCCCTCTACGCCAGCATCAATTCGTA
CCACTGTCTGAAAATCATTAACACGGAAAGTCAGGAGTCCTGGGAATGGCAGGAGAAAATGGGCCAGCACGCCCTGATAT
AG