Detailed information of component protein


Summary

Component ID T6CP001520
Component protein type TssG
T6SS ID (Type) T6SS00155 insolico (Type i1)
Strain Escherichia coli APEC O1
Replicon chromosome
Sequence Protein sequence (350 a.a.); Nucleotide sequence (1050 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) APECO1_RS01195
Coordinate (Strand) 257712..258761 (-)
NCBI ID WP_000896714.1
RefSeq NC_008563
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.4e-85 23..335
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 350 a.a.    

>T6CP001520 NC_008563:c258761-257712 [Escherichia coli APEC O1] [TssG]
MAGENGPARPDIATKPPLPADVRNCNFYVLMEALYRRHGAPGQDISLRTEPAREIVRFSSDASISFPGTDLSALSRSQNG
QYVLQTRFLGFSGSQSPLPGYYLDQMAQESAQNEDGLKEFLDLFSHRWTQFAYHAWRKYRYYICFRSGGTDTFSQRMYAL
VGLGNQSVRDRLAINHSKMLAYAGILATPGRAPEVICNLVSHCFDLPDVTIERWQLRKVAIDPAHQNRLGVRNPKGKTAG
HIPGRSILGVNFTLGARVPDRSGKFLLQIGGLSRERYLSFLPDGENHLPLTMFLSFILRDQFAWDLRLCLAPQQAKGMRL
SDPASSRLGRTSFIGQPKVPPAITIRIRE*

  Nucleotide sequence: 1050 bp    

>T6CP001520 NC_008563:c258761-257712 [Escherichia coli APEC O1] [TssG]
ATGGCAGGAGAAAATGGGCCAGCACGCCCTGATATAGCGACAAAACCGCCGTTACCGGCGGATGTGCGCAACTGCAATTT
CTATGTGCTGATGGAGGCGCTGTACCGTCGGCATGGCGCGCCGGGCCAGGACATTTCCCTGCGTACCGAGCCTGCCCGGG
AGATCGTGCGTTTCAGCTCTGACGCCAGTATCAGTTTTCCGGGTACGGACCTGAGTGCGCTTTCCCGTAGCCAGAACGGA
CAGTATGTACTGCAAACCCGGTTCCTGGGTTTTTCCGGCAGCCAGTCGCCGCTACCGGGCTATTATCTGGATCAGATGGC
GCAGGAGTCCGCACAGAACGAAGACGGCCTGAAAGAATTTCTCGATCTATTCAGCCACCGCTGGACACAGTTTGCCTATC
ATGCCTGGCGCAAATACCGCTACTACATCTGCTTTCGTAGCGGCGGTACTGACACCTTTTCACAGCGCATGTACGCACTG
GTCGGGCTGGGTAATCAGAGCGTGCGTGACAGGCTTGCCATTAACCACAGCAAAATGCTGGCCTACGCCGGAATTCTGGC
AACACCAGGCCGCGCGCCGGAGGTTATCTGTAATCTGGTGTCGCACTGTTTTGATTTGCCGGATGTCACCATTGAACGCT
GGCAACTGCGTAAAGTCGCCATTGATCCGGCACACCAGAACCGGCTGGGTGTACGTAATCCGAAAGGAAAAACGGCTGGA
CATATTCCGGGACGCTCCATACTCGGCGTTAATTTTACCCTCGGCGCACGGGTGCCGGATCGCAGCGGAAAATTCCTGTT
GCAGATTGGCGGCCTGTCGCGGGAGCGTTATCTCTCATTTTTACCCGATGGCGAAAATCACCTGCCGCTGACCATGTTCC
TTTCCTTTATTCTGCGCGACCAGTTTGCCTGGGATTTACGGCTGTGCCTGGCGCCACAGCAGGCTAAAGGGATGCGCCTT
AGCGATCCGGCCAGCTCCCGCCTCGGCAGAACCAGCTTTATTGGTCAGCCGAAAGTACCGCCCGCCATCACAATCCGAAT
CAGGGAATAA