Detailed information of component protein
Summary
| Component ID | T6CP001517 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00155  (Type i1) |
| Strain | Escherichia coli APEC O1 |
| Replicon | chromosome |
| Sequence | Protein sequence (255 a.a.); Nucleotide sequence (765 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | APECO1_RS01175 |
| Coordinate (Strand) | 253776..254540 (-) |
| NCBI ID | WP_001282178.1 |
| RefSeq | NC_008563 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 7.5e-55 | 34..234 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 255 a.a.
>T6CP001517 NC_008563:c254540-253776 [Escherichia coli APEC O1] [TssL]
MSDMSEASVFPVEPESGTPGRQYRLALRGNSLNPMIDAATPLLGMVMRLSTMNSQAMPEHLFTQVVTDVQAVEQLLQEQG
YEPGVIVSFRYILCTFIDEAALGNGWSNKNEWIKQSLLVHFHNEAWGGEKVFILLERLIREPVRYQDLLEFLYLCFSLGF
RGRYKVAIQQQDEFERIYQRLHHALHKLRGDAPFPLLHQKNNIQGGRYQLIRRLTIKHVLCGGLVVLTVFYLFYLLRLDS
QTQDILHQLNKLLR*
MSDMSEASVFPVEPESGTPGRQYRLALRGNSLNPMIDAATPLLGMVMRLSTMNSQAMPEHLFTQVVTDVQAVEQLLQEQG
YEPGVIVSFRYILCTFIDEAALGNGWSNKNEWIKQSLLVHFHNEAWGGEKVFILLERLIREPVRYQDLLEFLYLCFSLGF
RGRYKVAIQQQDEFERIYQRLHHALHKLRGDAPFPLLHQKNNIQGGRYQLIRRLTIKHVLCGGLVVLTVFYLFYLLRLDS
QTQDILHQLNKLLR*
Nucleotide sequence: 765 bp
>T6CP001517 NC_008563:c254540-253776 [Escherichia coli APEC O1] [TssL]
ATGAGCGATATGAGTGAAGCGTCGGTTTTTCCCGTGGAGCCGGAGAGCGGAACACCAGGACGCCAGTACCGTCTCGCCCT
TCGCGGCAACAGCCTGAATCCAATGATTGACGCCGCCACGCCGTTGCTCGGCATGGTGATGCGTCTGTCCACTATGAACA
GTCAGGCCATGCCGGAACATCTGTTTACCCAGGTAGTAACCGATGTCCAGGCCGTAGAGCAACTACTCCAGGAACAGGGA
TACGAACCGGGCGTCATTGTTTCGTTCCGTTACATTCTCTGCACGTTTATTGATGAAGCGGCGCTGGGCAACGGCTGGTC
CAACAAAAACGAATGGATCAAACAGTCGCTGCTGGTTCATTTTCATAACGAAGCCTGGGGCGGCGAGAAAGTGTTTATCC
TGCTCGAACGCCTGATCCGGGAGCCGGTACGTTACCAGGATCTGCTGGAATTTTTATACCTCTGTTTTTCGCTCGGCTTT
CGCGGGCGCTACAAGGTTGCCATTCAGCAACAGGATGAATTTGAGCGGATCTACCAGCGCCTGCACCATGCCCTGCACAA
ACTGCGCGGTGACGCGCCATTTCCGCTACTTCATCAGAAGAACAACATACAGGGTGGGCGTTATCAGTTAATCCGACGAC
TGACCATCAAGCATGTACTGTGCGGCGGTCTTGTTGTGCTGACCGTATTTTATCTGTTTTATCTGCTGCGTCTGGACAGC
CAGACACAGGATATTCTGCATCAGCTCAATAAATTACTCCGATAA
ATGAGCGATATGAGTGAAGCGTCGGTTTTTCCCGTGGAGCCGGAGAGCGGAACACCAGGACGCCAGTACCGTCTCGCCCT
TCGCGGCAACAGCCTGAATCCAATGATTGACGCCGCCACGCCGTTGCTCGGCATGGTGATGCGTCTGTCCACTATGAACA
GTCAGGCCATGCCGGAACATCTGTTTACCCAGGTAGTAACCGATGTCCAGGCCGTAGAGCAACTACTCCAGGAACAGGGA
TACGAACCGGGCGTCATTGTTTCGTTCCGTTACATTCTCTGCACGTTTATTGATGAAGCGGCGCTGGGCAACGGCTGGTC
CAACAAAAACGAATGGATCAAACAGTCGCTGCTGGTTCATTTTCATAACGAAGCCTGGGGCGGCGAGAAAGTGTTTATCC
TGCTCGAACGCCTGATCCGGGAGCCGGTACGTTACCAGGATCTGCTGGAATTTTTATACCTCTGTTTTTCGCTCGGCTTT
CGCGGGCGCTACAAGGTTGCCATTCAGCAACAGGATGAATTTGAGCGGATCTACCAGCGCCTGCACCATGCCCTGCACAA
ACTGCGCGGTGACGCGCCATTTCCGCTACTTCATCAGAAGAACAACATACAGGGTGGGCGTTATCAGTTAATCCGACGAC
TGACCATCAAGCATGTACTGTGCGGCGGTCTTGTTGTGCTGACCGTATTTTATCTGTTTTATCTGCTGCGTCTGGACAGC
CAGACACAGGATATTCTGCATCAGCTCAATAAATTACTCCGATAA