Detailed information of component protein


Summary

Component ID T6CP001515
Component protein type TssM
T6SS ID (Type) T6SS00155 insolico (Type i1)
Strain Escherichia coli APEC O1
Replicon chromosome
Sequence Protein sequence (1156 a.a.); Nucleotide sequence (3468 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) APECO1_RS01155
Coordinate (Strand) 245273..248740 (-)
NCBI ID WP_143702606.1
RefSeq NC_008563
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 2.2e-66 488..799
IcmF-related_N PF14331.8 1.1e-58 191..435
IcmF_C PF06744.14 7.6e-20 1029..1133
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1156 a.a.    

>T6CP001515 NC_008563:c248740-245273 [Escherichia coli APEC O1] [TssM]
MPRFKVSATWLLTLAWIFLLVWIWWQGPKWTLYEQHWLAPLANRWLATAVWGLIALVWLTWRVMKRLQKLEKQQKQQREE
EKDPLTVELHRQQQYLDHWLLRLRRHLDNRRYLWQLPWYMVIGPAGSGKSTLLREGFPSDIVYTPESIRGVEYHPLITPR
VGNQAVIFDVDGVLTTPGGDDLLRRRLREHWLGWLMQTRARQPLNGLILTLDLPDLLTADKSRRETLVQNLRQQLQEIRQ
SLHCRLPVYVVLTRLDLLNGFAALFHSLDKKDRDAILGVTFTRRAHESDGWRSELGAFWQTWVQQVNLALSDLVLAQTGA
APRSAVFSFSRQMQGTGEIVTALLAALLDGENMDVMLRGVWLTSSLQRGQVDDIFTQSAARQYGLGNSSLATWPLVETTP
YFTRRLFPEVLLAEPNLAGENSVWLNSSRRRLTAFSTCGAALAALMVGSWHHYYNQNWQSGVNVLAQAKAFMDVPPPQGT
DEFGNLQLPLLNPVRDATLAYGDYRDHGFLADMGLYQGARVGPYVEQTYIQLLEQRYLPSLMNGLIRDLNIAPPESEEKL
AVLRVVRMMEDKSGRNNEAVKQYMARRWSNEFHGQRDIQAQLMVHLDYALEHTDWHAQRQSSDSDAVSRWTPYDKPIINA
QQELSKLPIYQRVYQTLRTKALSVLPADLNLRDQVGPTFDNVFVAGNDEKLVIPQFLTRYGLQSYFVKQREGLVELTALD
SWVLNLTQSVAYSEADREEIQRHITEQYISDYTATWRAGMDNLNVRDYEAMSALTDALEQIISGDQPFQRALTALRDNTH
ALTLSGKLDDKAREAAINEMDYRLLSRLGHEFAPENSALEEQKDKASTLQAVYQQLTELHRYLLAIQNSPVPGKSALKAV
QLRLDQNSSDPIFATRQMAKTLPAPLNRWVGKLADQAWHVVMVEAVRYMEVDWRDNVVKPFNEQLADNYPFNPRATQDAS
LDSFERFFKPDGILDNFYKNNLRLFLENDLTFGDDGRVLIREDIRQQLDTVQKIRDIFFSQQNGLGAQFAVETVSLSGNK
RRSVLNLDGQLVDYSQGRNYTAHLVWPNNMREGNESKLTLIGTSGRAPRSIAFSGPWAQFRLFGAGQLTNVTSDTFNVRF
NVDGGAMVYQVHVDTEDNPFTGGLFSLFRLPDTLY*

  Nucleotide sequence: 3468 bp    

>T6CP001515 NC_008563:c248740-245273 [Escherichia coli APEC O1] [TssM]
ATGCCGCGGTTTAAAGTTTCCGCCACCTGGCTACTGACGCTGGCATGGATTTTTCTGCTGGTGTGGATCTGGTGGCAGGG
TCCAAAATGGACGCTCTATGAGCAGCACTGGCTGGCTCCGCTGGCAAACCGCTGGCTGGCGACCGCCGTCTGGGGACTTA
TCGCTCTGGTCTGGCTCACCTGGCGGGTGATGAAGCGTCTGCAAAAGCTGGAAAAACAGCAGAAACAGCAGCGGGAGGAA
GAAAAAGATCCGTTGACCGTGGAACTCCACCGCCAGCAGCAATATCTGGATCACTGGCTGCTGCGCCTGCGCCGCCATCT
GGATAACCGCCGTTATCTGTGGCAGTTGCCGTGGTATATGGTCATTGGTCCTGCGGGTAGCGGCAAAAGCACGCTGCTGC
GCGAGGGCTTTCCGTCTGACATTGTTTACACGCCGGAAAGCATCCGGGGTGTGGAATACCACCCGCTGATCACACCGCGA
GTGGGCAACCAGGCGGTAATTTTCGATGTTGACGGCGTACTGACCACTCCCGGCGGGGATGATCTGCTCCGCCGCCGCCT
GCGCGAACACTGGCTGGGCTGGCTGATGCAAACGCGCGCTCGCCAGCCGCTCAACGGTCTTATCCTGACGCTCGATCTTC
CCGATCTGCTGACGGCGGATAAATCCCGCCGTGAGACACTGGTACAAAATTTGCGCCAGCAACTTCAGGAGATCCGTCAG
AGCCTGCACTGCCGTCTGCCCGTTTACGTGGTGCTGACACGGCTGGATCTGCTGAACGGCTTTGCCGCGCTGTTCCATTC
ACTGGATAAAAAAGACCGCGATGCGATCCTCGGCGTCACATTTACCCGCCGCGCCCATGAAAGTGACGGCTGGCGCAGCG
AACTGGGGGCTTTCTGGCAGACGTGGGTACAACAGGTGAACCTGGCGCTGTCGGATCTGGTGCTCGCACAAACCGGTGCT
GCTCCCCGCAGCGCTGTGTTCAGCTTCTCCCGTCAGATGCAGGGAACAGGAGAAATCGTCACCGCACTGCTCGCCGCATT
GCTGGACGGTGAGAACATGGATGTAATGCTGCGTGGCGTCTGGCTCACATCCTCGCTACAGCGTGGCCAGGTGGATGATA
TTTTCACGCAGTCCGCCGCCCGCCAGTACGGACTGGGTAACAGCTCGCTGGCAACCTGGCCTCTGGTGGAGACGACGCCG
TATTTTACTCGCCGCCTCTTCCCGGAAGTCCTGCTGGCTGAGCCGAACCTGGCGGGTGAAAACAGCGTCTGGCTGAACAG
CTCCCGGCGCAGGCTGACCGCCTTTTCCACCTGTGGCGCGGCACTGGCGGCATTGATGGTCGGAAGCTGGCACCATTATT
ACAATCAGAACTGGCAGTCTGGCGTTAACGTACTGGCACAAGCTAAAGCCTTTATGGACGTACCACCACCGCAGGGAACG
GATGAATTCGGCAATCTGCAATTGCCATTGCTTAACCCGGTACGCGATGCCACCCTGGCCTATGGTGATTATCGCGATCA
CGGTTTTCTGGCGGATATGGGATTGTACCAGGGCGCCCGCGTAGGGCCGTATGTGGAGCAAACCTACATTCAGCTTCTTG
AGCAGCGTTATCTCCCCTCGTTAATGAACGGCCTGATCCGGGATCTAAACATTGCCCCGCCAGAGAGCGAAGAAAAGCTC
GCTGTGCTGCGCGTAGTGCGCATGATGGAAGACAAAAGTGGGCGCAACAACGAGGCGGTAAAACAGTACATGGCACGGCG
CTGGAGCAATGAATTTCACGGCCAGCGCGATATTCAGGCGCAACTGATGGTGCATCTGGACTATGCGCTGGAGCACACCG
ACTGGCACGCGCAGCGCCAAAGCAGCGACAGCGATGCTGTCAGCCGCTGGACCCCCTATGATAAACCGATCATTAATGCG
CAGCAGGAACTGAGCAAGCTGCCCATATACCAGCGTGTCTACCAGACCCTGCGCACCAAAGCATTAAGCGTGTTGCCCGC
CGATTTGAATTTGCGCGACCAGGTTGGTCCCACCTTCGACAACGTGTTCGTCGCCGGTAATGATGAAAAACTGGTGATCC
CGCAGTTCCTCACCCGCTATGGACTGCAAAGCTATTTTGTCAAACAGCGTGAGGGCCTCGTTGAGCTGACCGCGCTGGAT
TCGTGGGTACTGAACCTGACGCAAAGCGTCGCCTACAGCGAGGCCGACCGTGAAGAGATCCAGCGCCATATCACCGAACA
GTACATCAGTGACTATACCGCCACCTGGCGTGCCGGAATGGATAACCTCAACGTCCGTGACTATGAGGCCATGTCGGCGC
TGACCGACGCGCTGGAGCAGATTATCAGCGGCGATCAGCCATTCCAGCGTGCGCTGACGGCGCTGCGCGATAATACCCAC
GCGCTGACGCTCTCCGGCAAACTGGATGATAAGGCGAGGGAAGCGGCGATAAATGAGATGGATTACCGCCTGTTATCCCG
GCTGGGGCATGAGTTCGCACCGGAAAACAGCGCACTGGAGGAGCAAAAGGACAAGGCGAGTACGCTACAGGCCGTGTACC
AGCAACTGACCGAGCTGCACCGTTACCTGCTGGCGATCCAGAACTCGCCAGTGCCGGGGAAATCGGCGCTGAAAGCAGTA
CAGCTACGGCTGGATCAAAACAGCAGCGATCCAATCTTCGCCACCCGTCAGATGGCAAAAACCCTGCCTGCGCCTCTTAA
CCGCTGGGTAGGTAAGCTCGCGGATCAGGCCTGGCATGTGGTGATGGTGGAAGCCGTTCGTTACATGGAAGTGGACTGGC
GCGACAATGTAGTGAAACCCTTCAACGAGCAGCTTGCCGATAACTATCCGTTTAATCCGCGCGCCACACAGGATGCCTCA
CTGGATTCGTTTGAACGTTTCTTTAAACCGGATGGCATTCTGGACAATTTCTACAAGAACAACCTGCGCCTGTTCCTTGA
AAACGATCTGACCTTTGGCGACGACGGCAGAGTGTTAATCCGTGAAGATATCCGGCAGCAACTGGATACCGTGCAGAAAA
TCCGCGACATCTTCTTCAGCCAGCAGAACGGGCTGGGCGCACAGTTTGCCGTGGAAACCGTATCGCTTTCCGGCAATAAG
CGGCGCAGCGTACTTAACCTGGACGGCCAGTTAGTGGACTACAGCCAGGGACGCAACTACACCGCCCATCTGGTCTGGCC
GAACAACATGCGTGAAGGCAATGAAAGCAAGCTGACGCTGATTGGCACCAGCGGCAGAGCACCGCGCAGTATCGCGTTCA
GTGGACCGTGGGCGCAGTTCCGCCTGTTCGGCGCGGGCCAGTTGACCAATGTGACCAGTGACACCTTTAACGTGCGCTTT
AACGTGGACGGCGGCGCAATGGTTTACCAGGTGCATGTGGATACCGAAGATAACCCGTTCACCGGCGGTCTGTTCAGCCT
GTTCCGTTTACCGGATACGTTGTATTAA