Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PA14_RS17485 |
Coordinate (Strand) | 3829090..3829596 (-) |
NCBI ID | WP_003087592.1 |
RefSeq | NC_008463 |
Uniprot ID | V6AH74_PSEAI, A0A0H2Z8A7_PSEAB, A0A231II97_PSEAI |
KEGG ID | pau:PA14_43040 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VipA | PF05591.14 | 8.7e-53 | 6..158 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-168 | MAKEGSVAPKERINVTFKPATGGAQEEIELPLKLLAIGDYTQRGDERKVEDRKPIGIDKMTFDEVLAKQELGLTLSVPNRLQEEGGSDELAVGLQINSMKDFNPASIVEQVPELKKLMELRDALVALKGPLGNAPAFRKAIESVLADDESRSRVLGELGLSAAPSQDA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9965 | - | - |
Protein sequence: 169 a.a.
>T6CP001486 NC_008463:c3829596-3829090 [Pseudomonas aeruginosa UCBPP-PA14] [TssB]
MAKEGSVAPKERINVTFKPATGGAQEEIELPLKLLAIGDYTQRGDERKVEDRKPIGIDKMTFDEVLAKQELGLTLSVPNR
LQEEGGSDELAVGLQINSMKDFNPASIVEQVPELKKLMELRDALVALKGPLGNAPAFRKAIESVLADDESRSRVLGELGL
SAAPSQDA*
MAKEGSVAPKERINVTFKPATGGAQEEIELPLKLLAIGDYTQRGDERKVEDRKPIGIDKMTFDEVLAKQELGLTLSVPNR
LQEEGGSDELAVGLQINSMKDFNPASIVEQVPELKKLMELRDALVALKGPLGNAPAFRKAIESVLADDESRSRVLGELGL
SAAPSQDA*
Nucleotide sequence: 507 bp
>T6CP001486 NC_008463:c3829596-3829090 [Pseudomonas aeruginosa UCBPP-PA14] [TssB]
ATGGCCAAAGAAGGCTCGGTAGCCCCAAAGGAACGCATCAACGTCACTTTCAAGCCCGCCACCGGCGGCGCCCAGGAAGA
AATCGAACTGCCGTTGAAGCTACTGGCGATCGGCGATTACACCCAGCGCGGGGATGAGCGCAAGGTGGAGGACCGCAAGC
CGATCGGCATCGACAAGATGACCTTCGACGAGGTCCTGGCCAAGCAGGAGCTGGGGCTGACGCTGAGCGTACCCAATCGT
CTCCAGGAGGAGGGCGGCAGCGACGAGCTGGCGGTGGGGCTGCAGATCAACTCGATGAAGGACTTCAACCCGGCCAGCAT
CGTCGAGCAGGTGCCCGAGCTGAAGAAGCTGATGGAGTTGCGCGATGCGCTGGTGGCCCTCAAGGGCCCGCTGGGCAACG
CCCCGGCGTTCCGCAAGGCCATCGAAAGCGTACTCGCCGACGACGAGTCCCGTAGCCGTGTGCTGGGCGAGCTGGGGCTG
AGCGCCGCCCCCTCCCAGGACGCCTGA
ATGGCCAAAGAAGGCTCGGTAGCCCCAAAGGAACGCATCAACGTCACTTTCAAGCCCGCCACCGGCGGCGCCCAGGAAGA
AATCGAACTGCCGTTGAAGCTACTGGCGATCGGCGATTACACCCAGCGCGGGGATGAGCGCAAGGTGGAGGACCGCAAGC
CGATCGGCATCGACAAGATGACCTTCGACGAGGTCCTGGCCAAGCAGGAGCTGGGGCTGACGCTGAGCGTACCCAATCGT
CTCCAGGAGGAGGGCGGCAGCGACGAGCTGGCGGTGGGGCTGCAGATCAACTCGATGAAGGACTTCAACCCGGCCAGCAT
CGTCGAGCAGGTGCCCGAGCTGAAGAAGCTGATGGAGTTGCGCGATGCGCTGGTGGCCCTCAAGGGCCCGCTGGGCAACG
CCCCGGCGTTCCGCAAGGCCATCGAAAGCGTACTCGCCGACGACGAGTCCCGTAGCCGTGTGCTGGGCGAGCTGGGGCTG
AGCGCCGCCCCCTCCCAGGACGCCTGA