Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PA14_RS17465 |
Coordinate (Strand) | 3824071..3825078 (-) |
NCBI ID | WP_003140086.1 |
RefSeq | NC_008463 |
Uniprot ID | A0A0H2Z9M4_PSEAB |
KEGG ID | pau:PA14_42990 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssG | PF06996.13 | 1.4e-88 | 20..320 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-335 | METAHGFAAPAVSALARGIREYSLFQAVLLVMDRLREEHPGLGDEALYDQLEFQANPSLGFPGSDVDRVEFFEERGMLRARLRFNLIGLFGASSPLPAFYSEQALGDSEEGNPTRNFLDLFHHRLHRLLLPIWRKYRYRVSFQSGASDAFSAQLFALVGLGGEEIRKARELNWKRLLPYLGLLSLRAHSAALIESVLRYYFKHAELVAEQCIERRVAILEEQRNRLGLFNSQLGEDAVLGERVRDRSGKFRIHIRQLDWQRFHEFLPIGPGYQPLCALVRFTLRDPLDYDIRLVLRQEEIREFRIGAQNACRLGWTSWLGRERADGVVTLGSKIH |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9313 | - | - |
Protein sequence: 336 a.a.
>T6CP001483 NC_008463:c3825078-3824071 [Pseudomonas aeruginosa UCBPP-PA14] [TssG]
METAHGFAAPAVSALARGIREYSLFQAVLLVMDRLREEHPGLGDEALYDQLEFQANPSLGFPGSDVDRVEFFEERGMLRA
RLRFNLIGLFGASSPLPAFYSEQALGDSEEGNPTRNFLDLFHHRLHRLLLPIWRKYRYRVSFQSGASDAFSAQLFALVGL
GGEEIRKARELNWKRLLPYLGLLSLRAHSAALIESVLRYYFKHAELVAEQCIERRVAILEEQRNRLGLFNSQLGEDAVLG
ERVRDRSGKFRIHIRQLDWQRFHEFLPIGPGYQPLCALVRFTLRDPLDYDIRLVLRQEEIREFRIGAQNACRLGWTSWLG
RERADGVVTLGSKIH*
METAHGFAAPAVSALARGIREYSLFQAVLLVMDRLREEHPGLGDEALYDQLEFQANPSLGFPGSDVDRVEFFEERGMLRA
RLRFNLIGLFGASSPLPAFYSEQALGDSEEGNPTRNFLDLFHHRLHRLLLPIWRKYRYRVSFQSGASDAFSAQLFALVGL
GGEEIRKARELNWKRLLPYLGLLSLRAHSAALIESVLRYYFKHAELVAEQCIERRVAILEEQRNRLGLFNSQLGEDAVLG
ERVRDRSGKFRIHIRQLDWQRFHEFLPIGPGYQPLCALVRFTLRDPLDYDIRLVLRQEEIREFRIGAQNACRLGWTSWLG
RERADGVVTLGSKIH*
Nucleotide sequence: 1008 bp
>T6CP001483 NC_008463:c3825078-3824071 [Pseudomonas aeruginosa UCBPP-PA14] [TssG]
ATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAAGCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTGTTCCAGGC
GGTCCTGCTGGTCATGGATCGCCTGCGCGAGGAACATCCCGGCCTGGGAGACGAAGCGCTCTACGATCAGTTGGAATTCC
AGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGATCGGGTGGAGTTCTTCGAAGAGCGCGGCATGCTGCGGGCG
CGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTGCCGGCGTTCTACAGCGAGCAGGCCCTGGGCGA
CAGCGAGGAGGGCAATCCTACGCGGAACTTCCTCGATCTCTTCCATCACCGCCTGCATCGGCTGCTATTGCCGATCTGGC
GCAAGTACCGCTACCGGGTGAGCTTCCAGAGCGGCGCGAGCGATGCGTTCTCCGCTCAGTTGTTCGCCCTCGTCGGATTG
GGCGGGGAAGAGATCCGCAAGGCCAGGGAACTGAACTGGAAACGTCTGCTGCCCTACCTGGGCCTGCTCAGCCTGCGGGC
GCACTCGGCGGCCTTGATCGAGTCGGTGCTGCGCTACTACTTCAAGCATGCCGAACTGGTCGCCGAGCAGTGTATAGAAC
GGCGCGTCGCGATCCTCGAAGAGCAGCGCAACCGACTCGGCCTGTTCAACAGCCAGCTTGGCGAAGACGCGGTGCTGGGC
GAACGGGTCCGCGACCGCAGCGGCAAGTTCCGCATTCATATCCGCCAGCTCGACTGGCAGCGCTTCCACGAGTTCCTGCC
GATCGGTCCCGGCTACCAGCCGCTTTGCGCGCTGGTCCGCTTCACCCTGCGCGACCCGCTCGACTACGACATCCGGCTGG
TCTTGCGCCAGGAGGAAATCCGCGAGTTCCGCATCGGCGCTCAGAACGCCTGCCGCCTTGGCTGGACCAGTTGGCTGGGC
CGGGAGCGCGCCGATGGCGTGGTGACGCTGGGCAGCAAGATTCATTAA
ATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAAGCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTGTTCCAGGC
GGTCCTGCTGGTCATGGATCGCCTGCGCGAGGAACATCCCGGCCTGGGAGACGAAGCGCTCTACGATCAGTTGGAATTCC
AGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGATCGGGTGGAGTTCTTCGAAGAGCGCGGCATGCTGCGGGCG
CGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTGCCGGCGTTCTACAGCGAGCAGGCCCTGGGCGA
CAGCGAGGAGGGCAATCCTACGCGGAACTTCCTCGATCTCTTCCATCACCGCCTGCATCGGCTGCTATTGCCGATCTGGC
GCAAGTACCGCTACCGGGTGAGCTTCCAGAGCGGCGCGAGCGATGCGTTCTCCGCTCAGTTGTTCGCCCTCGTCGGATTG
GGCGGGGAAGAGATCCGCAAGGCCAGGGAACTGAACTGGAAACGTCTGCTGCCCTACCTGGGCCTGCTCAGCCTGCGGGC
GCACTCGGCGGCCTTGATCGAGTCGGTGCTGCGCTACTACTTCAAGCATGCCGAACTGGTCGCCGAGCAGTGTATAGAAC
GGCGCGTCGCGATCCTCGAAGAGCAGCGCAACCGACTCGGCCTGTTCAACAGCCAGCTTGGCGAAGACGCGGTGCTGGGC
GAACGGGTCCGCGACCGCAGCGGCAAGTTCCGCATTCATATCCGCCAGCTCGACTGGCAGCGCTTCCACGAGTTCCTGCC
GATCGGTCCCGGCTACCAGCCGCTTTGCGCGCTGGTCCGCTTCACCCTGCGCGACCCGCTCGACTACGACATCCGGCTGG
TCTTGCGCCAGGAGGAAATCCGCGAGTTCCGCATCGGCGCTCAGAACGCCTGCCGCCTTGGCTGGACCAGTTGGCTGGGC
CGGGAGCGCGCCGATGGCGTGGTGACGCTGGGCAGCAAGATTCATTAA