Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PA14_RS17440 |
Coordinate (Strand) | 3817957..3818463 (-) |
NCBI ID | WP_003110438.1 |
RefSeq | NC_008463 |
Uniprot ID | V6AHZ7_PSEAI, A0A1C7BUJ7_PSEAI, A0A0H2Z9N1_PSEAB, A0A233TBL2_PSEAI |
KEGG ID | pau:PA14_42940 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS-SciN | PF12790.9 | 9.9e-41 | 34..151 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Inside | 1-11 | MSRRPIPPARA |
Transmembrane helix | 12-31 | LAMLAVLALLAGCSTLSPYS |
Outside | 32-168 | RLTKLDLALSAGERVNPDLNGRPSPVVVRLFELKHPVAFENADFFSLYERPKETLDPDLVTSEELELRPGERVELKLSVEEGSRYVGVLAAYRDLGEASWRYVVPVTAKELTRVELKLGRKGILNAGELLGKAGDAR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
LIPO(Sec/SPII) | 0.9983 | pos: 23-24. LAG-CS. | MSRRPIPPARALAMLAVLALLAG |
Protein sequence: 169 a.a.
>T6CP001481 NC_008463:c3818463-3817957 [Pseudomonas aeruginosa UCBPP-PA14] [TssJ]
MSRRPIPPARALAMLAVLALLAGCSTLSPYSRLTKLDLALSAGERVNPDLNGRPSPVVVRLFELKHPVAFENADFFSLYE
RPKETLDPDLVTSEELELRPGERVELKLSVEEGSRYVGVLAAYRDLGEASWRYVVPVTAKELTRVELKLGRKGILNAGEL
LGKAGDAR*
MSRRPIPPARALAMLAVLALLAGCSTLSPYSRLTKLDLALSAGERVNPDLNGRPSPVVVRLFELKHPVAFENADFFSLYE
RPKETLDPDLVTSEELELRPGERVELKLSVEEGSRYVGVLAAYRDLGEASWRYVVPVTAKELTRVELKLGRKGILNAGEL
LGKAGDAR*
Nucleotide sequence: 507 bp
>T6CP001481 NC_008463:c3818463-3817957 [Pseudomonas aeruginosa UCBPP-PA14] [TssJ]
ATGTCTCGTCGCCCGATTCCGCCAGCCAGGGCGCTGGCCATGCTCGCCGTCCTGGCGCTGCTGGCCGGCTGTTCCACGCT
GTCGCCGTATTCCAGACTGACCAAGCTCGACCTCGCCCTGAGCGCCGGCGAGCGGGTCAATCCCGACCTCAATGGCCGGC
CGTCGCCGGTGGTAGTGCGGCTGTTCGAGCTGAAGCACCCGGTGGCGTTCGAGAACGCCGACTTCTTCAGCCTCTACGAA
CGTCCCAAGGAGACCCTGGACCCCGACCTGGTGACCAGCGAGGAGCTGGAGCTGCGGCCCGGCGAGCGGGTCGAACTCAA
ACTCAGCGTGGAGGAGGGGAGCCGCTACGTGGGCGTGCTCGCCGCCTACCGCGATCTCGGCGAGGCAAGCTGGCGCTACG
TGGTGCCGGTCACGGCGAAAGAGCTGACCCGGGTAGAGCTGAAGCTGGGCCGGAAGGGCATCCTGAATGCCGGCGAACTG
CTCGGCAAGGCGGGTGACGCGCGATGA
ATGTCTCGTCGCCCGATTCCGCCAGCCAGGGCGCTGGCCATGCTCGCCGTCCTGGCGCTGCTGGCCGGCTGTTCCACGCT
GTCGCCGTATTCCAGACTGACCAAGCTCGACCTCGCCCTGAGCGCCGGCGAGCGGGTCAATCCCGACCTCAATGGCCGGC
CGTCGCCGGTGGTAGTGCGGCTGTTCGAGCTGAAGCACCCGGTGGCGTTCGAGAACGCCGACTTCTTCAGCCTCTACGAA
CGTCCCAAGGAGACCCTGGACCCCGACCTGGTGACCAGCGAGGAGCTGGAGCTGCGGCCCGGCGAGCGGGTCGAACTCAA
ACTCAGCGTGGAGGAGGGGAGCCGCTACGTGGGCGTGCTCGCCGCCTACCGCGATCTCGGCGAGGCAAGCTGGCGCTACG
TGGTGCCGGTCACGGCGAAAGAGCTGACCCGGGTAGAGCTGAAGCTGGGCCGGAAGGGCATCCTGAATGCCGGCGAACTG
CTCGGCAAGGCGGGTGACGCGCGATGA