Detailed information of component protein


Summary

Component ID T6CP001478
Component protein type TssM
T6SS ID (Type) T6SS00152 experimental (Type i1)
Strain Pseudomonas aeruginosa UCBPP-PA14
Replicon chromosome
Sequence Protein sequence (1176 a.a.); Nucleotide sequence (3528 bp)
Reference
[1] Barret M, Egan F, Fargier E, et al. Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology (Reading). 2011 Jun;157(Pt 6):1726-1739. doi: 10.1099/mic.0.048645-0. Epub 2011 Apr 7. PMID: 21474537
[2] Lesic B, Starkey M, He J, et al. Quorum sensing differentially regulates Pseudomonas aeruginosa type VI secretion locus I and homologous loci II and III, which are required for pathogenesis. Microbiology (Reading). 2009 Sep;155(Pt 9):2845-2855. doi: 10.1099/mic.0.029082-0. Epub 2009 Jun 4. PMID: 19497948
[3] Hachani A, Allsopp LP, Oduko Y, et al. The VgrG proteins are "à la carte" delivery systems for bacterial type VI effectors. J Biol Chem. 2014 Jun 20;289(25):17872-84. doi: 10.1074/jbc.M114.563429. Epub 2014 May 2. PMID: 24794869
[4] Jones C, Hachani A, Manoli E, et al. An rhs gene linked to the second type VI secretion cluster is a feature of the Pseudomonas aeruginosa strain PA14. J Bacteriol. 2014 Feb;196(4):800-10. doi: 10.1128/JB.00863-13. Epub 2013 Dec 6. PMID: 24317402
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PA14_RS17425
Coordinate (Strand) 3812214..3815741 (-)
NCBI ID WP_003140078.1
RefSeq NC_008463
Uniprot ID A0A0H2Z9K1_PSEAB
KEGG ID pau:PA14_42900
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1.2e-78 198..452
IcmF-related PF06761.14 1.2e-71 507..792
IcmF_C PF06744.14 2e-22 1050..1154
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-16 MKNFFKKVGAFLRKTW
Transmembrane helix 17-39 VWTLLLVLLAALLVWFVGPLLAV
Outside 40-48 ADYKFWESP
Transmembrane helix 49-71 TSRLLSISLMFLVWGLAMVFVSW
Inside 72-447 RAGVRRKAVEDSDEGQERLRRDGLIEDEQKELRSRFKDALRTLKTSSLYRGRSERWRNELPWYLLIGPQGSGKTSLLDFSGLEFPINRIDRKLTRDTAGTRYCDWYFADHGVLIDTAGRYLTQADGEVDGGAWATLLGLLRKRRRARPLNGVMVSIPVETLLSDDEMALDTLARQVRARLQEIQQTLHLDLPVYLVLSKADQLLGFDEFFDQLSREESDQVLGTSFGKEQNGTDVTVLRQAFEDLLRRLNSQVIMRIHQERDTLRRGRILDFPHQLGQIGERLCLFVELAFTGNRYQRASRLRGFYLTSAPHLAQQLDEDTAGIGANLGIASGLLPTLRNGRSRFIHHLLSQVIFPEANLAGLDRRERTRIHWGQR
Transmembrane helix 448-470 ALYVGSLALLLLFGLLWAGGFSA
Outside 471-1175 NHERLERVRELAQQWAQQRQALGERDDAMAALKTLDSSYAATTVFPPKGEVSLHERAGLYQGNEVNPPLTAAYRRELETQLLPRVARMLEAQIRGNMQNRERLLNSLRAYLMLNLRERRENGWLKDWVATDWSQRYAGNGTVQNGLNTHFARLLEQPFSYPLNDTLVAQARQVLRSESLANVVYRVLREQARSLPEYRFGQHLGPQAGLFVGTDYVIPGFYTQQGYQQYFVVQGASLVNDILRDNWVLGEGSGISDMDLRRLMVELEQLYFRDYANFWSEAVGRLGLLPFNDAGEGADQVSGLLAANSPILQLLLEVRENTRFPVLAESAEALAEASDKAAEKGGKLGKAAAAAAGKARDALAKNLPDTAKKSLQRRFEPLHRLLDDNNGPAADLTPLLQALNELQLQLAGLARASQPEQAAFDMAKSRMGGQRDALSNLRNASARLPRPLGGWFSVLAEDAWRLVLGDAYLYLNQRYQSELYGFYSKAINKRYPFNAHSASDVAVSDFREFFKAQGVAERFFETYMRPFVSGDPGSYRLRSVDGYSLPMSKVYLDQMGTAQVIRQSFFAENPAEPQVRFRLEPYTLDPGVSRAEFRFDGQSMEYRHGPIVPMSFKWPSDADGGRTSLVLEKMAGRPVGIERNTGPWSLFRLFDLMQTEYLSGRDVMVLKADLGGLRANYLLLAQRTPNPFDLAVLRSFRMPVQL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 1176 a.a.    

>T6CP001478 NC_008463:c3815741-3812214 [Pseudomonas aeruginosa UCBPP-PA14] [TssM]
MKNFFKKVGAFLRKTWVWTLLLVLLAALLVWFVGPLLAVADYKFWESPTSRLLSISLMFLVWGLAMVFVSWRAGVRRKAV
EDSDEGQERLRRDGLIEDEQKELRSRFKDALRTLKTSSLYRGRSERWRNELPWYLLIGPQGSGKTSLLDFSGLEFPINRI
DRKLTRDTAGTRYCDWYFADHGVLIDTAGRYLTQADGEVDGGAWATLLGLLRKRRRARPLNGVMVSIPVETLLSDDEMAL
DTLARQVRARLQEIQQTLHLDLPVYLVLSKADQLLGFDEFFDQLSREESDQVLGTSFGKEQNGTDVTVLRQAFEDLLRRL
NSQVIMRIHQERDTLRRGRILDFPHQLGQIGERLCLFVELAFTGNRYQRASRLRGFYLTSAPHLAQQLDEDTAGIGANLG
IASGLLPTLRNGRSRFIHHLLSQVIFPEANLAGLDRRERTRIHWGQRALYVGSLALLLLFGLLWAGGFSANHERLERVRE
LAQQWAQQRQALGERDDAMAALKTLDSSYAATTVFPPKGEVSLHERAGLYQGNEVNPPLTAAYRRELETQLLPRVARMLE
AQIRGNMQNRERLLNSLRAYLMLNLRERRENGWLKDWVATDWSQRYAGNGTVQNGLNTHFARLLEQPFSYPLNDTLVAQA
RQVLRSESLANVVYRVLREQARSLPEYRFGQHLGPQAGLFVGTDYVIPGFYTQQGYQQYFVVQGASLVNDILRDNWVLGE
GSGISDMDLRRLMVELEQLYFRDYANFWSEAVGRLGLLPFNDAGEGADQVSGLLAANSPILQLLLEVRENTRFPVLAESA
EALAEASDKAAEKGGKLGKAAAAAAGKARDALAKNLPDTAKKSLQRRFEPLHRLLDDNNGPAADLTPLLQALNELQLQLA
GLARASQPEQAAFDMAKSRMGGQRDALSNLRNASARLPRPLGGWFSVLAEDAWRLVLGDAYLYLNQRYQSELYGFYSKAI
NKRYPFNAHSASDVAVSDFREFFKAQGVAERFFETYMRPFVSGDPGSYRLRSVDGYSLPMSKVYLDQMGTAQVIRQSFFA
ENPAEPQVRFRLEPYTLDPGVSRAEFRFDGQSMEYRHGPIVPMSFKWPSDADGGRTSLVLEKMAGRPVGIERNTGPWSLF
RLFDLMQTEYLSGRDVMVLKADLGGLRANYLLLAQRTPNPFDLAVLRSFRMPVQL*

  Nucleotide sequence: 3528 bp    

>T6CP001478 NC_008463:c3815741-3812214 [Pseudomonas aeruginosa UCBPP-PA14] [TssM]
ATGAAAAACTTCTTCAAGAAAGTCGGCGCCTTCCTGCGCAAGACGTGGGTCTGGACGCTGCTGCTGGTACTCCTGGCGGC
ATTGCTGGTGTGGTTCGTCGGGCCGCTGCTGGCGGTCGCCGACTACAAGTTCTGGGAAAGCCCGACCTCGCGGTTGCTGA
GCATCAGTCTGATGTTCCTGGTCTGGGGGCTGGCGATGGTCTTCGTCAGCTGGCGCGCCGGAGTGCGGCGCAAGGCCGTC
GAGGACAGCGACGAGGGCCAGGAGCGCCTGCGCCGTGACGGTCTGATCGAAGACGAACAGAAGGAATTGCGCAGCCGCTT
CAAGGACGCCTTGCGCACCCTGAAGACCTCCAGCCTGTACCGCGGTCGTAGCGAGCGCTGGCGCAACGAGCTGCCCTGGT
ACCTGCTGATCGGCCCGCAGGGAAGCGGCAAGACCAGCCTGCTGGACTTTTCCGGACTGGAGTTCCCGATCAACCGGATC
GACCGCAAGCTGACCCGCGATACCGCCGGCACGCGCTACTGCGACTGGTACTTCGCCGACCACGGCGTCCTGATCGACAC
CGCCGGGCGCTACCTGACCCAAGCCGACGGCGAGGTCGACGGGGGCGCCTGGGCGACCCTGCTCGGCCTGTTGCGCAAGC
GCCGCCGCGCACGGCCGCTGAATGGCGTGATGGTGTCGATTCCGGTGGAAACGTTGCTCAGCGACGACGAGATGGCGCTG
GATACGCTGGCTCGCCAGGTGCGCGCGCGCCTGCAGGAAATCCAGCAGACCCTGCACCTCGATCTGCCGGTCTACCTGGT
GCTGAGCAAGGCCGACCAGTTGCTCGGCTTCGACGAGTTCTTCGACCAGTTGAGCCGCGAGGAGAGCGACCAGGTTCTGG
GCACCAGCTTCGGCAAGGAGCAGAACGGCACCGATGTGACGGTCCTGCGCCAGGCGTTCGAGGACCTTCTGCGACGCCTG
AACAGCCAGGTGATCATGCGCATCCACCAGGAGCGCGATACTCTGCGTCGCGGTCGCATCCTCGACTTCCCGCACCAGCT
TGGCCAGATCGGCGAGCGGTTGTGCCTGTTCGTCGAACTCGCCTTCACCGGCAATCGCTACCAGCGCGCCAGCCGCCTGC
GCGGCTTCTACCTGACCAGCGCGCCGCACCTGGCCCAGCAGCTGGATGAGGACACCGCCGGCATCGGCGCCAACCTGGGG
ATCGCCAGCGGCCTGCTGCCGACCCTGCGCAACGGGCGCTCGCGCTTCATCCATCACCTGCTGAGCCAGGTGATCTTCCC
CGAGGCCAACCTGGCAGGTCTCGATCGCCGCGAGCGCACGCGCATCCACTGGGGCCAGCGCGCCCTGTACGTCGGTTCGC
TGGCGCTCCTTCTGCTATTCGGCCTGCTCTGGGCTGGCGGTTTCTCGGCCAACCACGAGCGCCTGGAGCGGGTCCGCGAG
CTGGCGCAGCAATGGGCCCAGCAGCGCCAGGCGCTTGGCGAGCGCGACGACGCCATGGCGGCGCTGAAGACGCTGGATAG
CAGCTATGCGGCGACCACCGTGTTTCCGCCCAAAGGCGAAGTCTCGCTGCACGAGCGCGCCGGGCTGTACCAGGGCAACG
AGGTCAACCCGCCGCTGACCGCTGCCTATCGCCGCGAGCTGGAGACGCAACTGCTGCCGCGCGTGGCGCGGATGCTCGAA
GCGCAGATCCGCGGCAACATGCAGAATCGCGAACGCCTGCTCAACAGCCTGCGGGCCTACCTGATGCTGAATCTGCGCGA
GCGCCGCGAGAACGGATGGCTCAAGGACTGGGTGGCTACCGACTGGTCGCAGCGCTATGCCGGCAACGGCACCGTGCAGA
ATGGCCTGAACACGCATTTCGCCCGTCTGCTCGAGCAACCGTTCAGCTATCCGCTGAACGACACCCTGGTGGCCCAGGCA
CGCCAGGTGCTGCGCAGCGAGTCCCTGGCCAACGTGGTCTACCGGGTGCTGCGCGAACAGGCGCGAAGCCTGCCCGAGTA
TCGCTTCGGCCAGCACCTGGGGCCGCAGGCCGGTCTGTTCGTCGGCACCGACTACGTGATCCCGGGGTTCTACACCCAGC
AGGGCTACCAGCAGTACTTCGTGGTCCAGGGCGCCAGCCTGGTCAACGACATCCTTCGCGACAACTGGGTCCTGGGCGAG
GGCAGCGGGATCAGCGACATGGACCTGCGGCGCCTGATGGTCGAACTCGAGCAGTTGTATTTCCGCGACTACGCGAACTT
CTGGAGCGAGGCGGTCGGACGCCTGGGCCTGCTGCCGTTCAACGATGCCGGCGAGGGCGCCGACCAGGTTTCCGGGCTGC
TCGCCGCCAACTCGCCGATCCTCCAGTTGTTGCTGGAGGTCCGTGAGAACACCCGTTTCCCGGTCCTGGCGGAGAGCGCC
GAGGCGCTGGCAGAGGCCAGCGACAAGGCCGCGGAAAAGGGCGGCAAGCTGGGCAAGGCGGCCGCCGCGGCGGCCGGCAA
GGCCAGGGACGCGTTGGCGAAGAACCTGCCGGATACCGCGAAGAAGTCCCTGCAACGCCGCTTCGAGCCCCTGCATCGCC
TGCTCGACGATAACAACGGCCCGGCGGCCGACCTCACCCCGCTGTTGCAGGCGCTCAACGAGTTGCAGTTGCAACTCGCC
GGACTGGCGCGCGCCAGCCAGCCGGAGCAGGCGGCTTTCGACATGGCGAAGAGCCGCATGGGCGGCCAGCGCGATGCCCT
GAGCAACCTGCGCAACGCCTCCGCGCGACTGCCGCGACCGCTCGGCGGATGGTTCAGCGTGCTGGCCGAAGACGCCTGGC
GGCTGGTCCTCGGCGATGCCTACCTGTACCTCAACCAGCGCTACCAGAGCGAGCTGTACGGTTTCTACAGCAAGGCGATC
AACAAGCGCTACCCGTTCAACGCGCACAGCGCCAGCGATGTCGCGGTCAGCGATTTCCGCGAGTTCTTCAAGGCGCAGGG
CGTCGCCGAACGCTTCTTCGAAACCTACATGCGGCCCTTCGTCAGCGGCGACCCGGGCAGCTACCGCCTGCGCAGCGTGG
ACGGCTACAGCCTGCCGATGTCCAAGGTCTATCTCGACCAGATGGGCACGGCCCAGGTGATTCGCCAGAGCTTCTTCGCC
GAGAACCCGGCCGAGCCGCAGGTGCGCTTCCGTCTGGAGCCCTATACCCTCGATCCTGGCGTCAGCCGCGCCGAGTTCCG
TTTCGACGGTCAATCCATGGAATACCGCCACGGCCCGATCGTGCCGATGTCGTTCAAGTGGCCCAGCGACGCCGACGGCG
GCCGCACCAGCCTGGTGCTGGAGAAGATGGCCGGGCGACCGGTGGGAATCGAACGCAATACCGGGCCCTGGTCGCTGTTC
AGGCTGTTCGACCTGATGCAGACCGAGTACCTCAGCGGGCGTGACGTGATGGTGCTCAAGGCCGACCTGGGCGGCCTGCG
CGCCAACTACCTGCTGCTCGCCCAGCGCACGCCGAATCCGTTCGATCTCGCGGTCCTGCGCAGCTTCCGCATGCCGGTGC
AGCTCTGA