Detailed information of component protein


Summary

Component ID T6CP001475
Component protein type TssK
T6SS ID (Type) T6SS00151 experimental (Type i4a)
Strain Pseudomonas aeruginosa UCBPP-PA14
Replicon chromosome
Sequence Protein sequence (444 a.a.); Nucleotide sequence (1332 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PA14_RS13905
Coordinate (Strand) 3030453..3031784 (+)
NCBI ID WP_003139318.1
RefSeq NC_008463
Uniprot ID A0A0H2ZBD2_PSEAB
KEGG ID pau:PA14_34100
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.1e-33 20..386
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-443 MSVLPDAVCWHEGMQLLPQHFQLQGLRAEALAARTGQACNPWFWGVTALELDPSALCAGQVRILHLEAILPDGLPVSVQAGVDAPLEFDLETALAAAEGPLLNVHLAVSPLWRAGQLLPLKGRLQSRVGAPLPDLASGEHPEPITVWRASLRLVGDDGKADSVCLPLLRVAKEGGAYVSLPYVPPTPLVLPESPLGRRVQSLCARAREKALFLGGRLRLAQQAGNQDDAVEVRRQLAALWTRLPEVEGLLASRAASPLALHGSLLGLAGAWAALDPLAGVPAFEALDFLDLRRGYEPLLDWLERAIESIRAGYRCLPFEQEEQVFSVRLPDPAPRQRLVVGLRMPAGAGEQAAADWLERAIVASDPHLPLLARQRMSGLARQPMNRQEQVAYSVGDDTRLFVVQGVGDWFDAGQPLRIVAPVSGVASSPWQIVLFVADGSDNT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9872 - -


  Protein sequence: 444 a.a.    

>T6CP001475 NC_008463:3030453-3031784 [Pseudomonas aeruginosa UCBPP-PA14] [TssK]
MSVLPDAVCWHEGMQLLPQHFQLQGLRAEALAARTGQACNPWFWGVTALELDPSALCAGQVRILHLEAILPDGLPVSVQA
GVDAPLEFDLETALAAAEGPLLNVHLAVSPLWRAGQLLPLKGRLQSRVGAPLPDLASGEHPEPITVWRASLRLVGDDGKA
DSVCLPLLRVAKEGGAYVSLPYVPPTPLVLPESPLGRRVQSLCARAREKALFLGGRLRLAQQAGNQDDAVEVRRQLAALW
TRLPEVEGLLASRAASPLALHGSLLGLAGAWAALDPLAGVPAFEALDFLDLRRGYEPLLDWLERAIESIRAGYRCLPFEQ
EEQVFSVRLPDPAPRQRLVVGLRMPAGAGEQAAADWLERAIVASDPHLPLLARQRMSGLARQPMNRQEQVAYSVGDDTRL
FVVQGVGDWFDAGQPLRIVAPVSGVASSPWQIVLFVADGSDNT*

  Nucleotide sequence: 1332 bp    

>T6CP001475 NC_008463:3030453-3031784 [Pseudomonas aeruginosa UCBPP-PA14] [TssK]
ATGAGTGTTCTGCCTGACGCGGTGTGCTGGCACGAAGGGATGCAACTGCTTCCCCAGCATTTCCAGTTGCAGGGATTGCG
TGCCGAGGCGCTGGCGGCGCGCACCGGACAGGCCTGCAACCCTTGGTTCTGGGGCGTGACCGCCCTGGAACTGGACCCCT
CGGCGTTGTGCGCCGGCCAAGTGCGGATCCTGCACCTCGAAGCGATCCTGCCCGACGGCCTGCCGGTGAGCGTGCAGGCT
GGTGTCGACGCACCGCTGGAGTTCGACCTGGAGACTGCGCTGGCGGCCGCCGAAGGGCCGCTGCTGAACGTCCACCTGGC
GGTCAGTCCGCTGTGGCGGGCGGGTCAGTTGCTGCCGCTGAAGGGCCGTCTGCAATCGCGGGTCGGCGCGCCGCTGCCGG
ACCTGGCCAGCGGCGAGCACCCCGAGCCGATCACCGTCTGGCGAGCGTCGCTGCGGCTGGTCGGCGACGACGGCAAGGCC
GACTCCGTGTGCCTGCCGTTGCTGCGCGTGGCGAAGGAGGGCGGCGCCTATGTCAGCCTGCCCTACGTCCCGCCGACGCC
ATTGGTGCTGCCGGAGTCGCCCCTGGGCAGGCGCGTGCAGTCGCTCTGCGCGCGGGCCCGGGAGAAGGCGCTGTTCCTCG
GCGGGCGCCTGCGCCTGGCGCAGCAGGCGGGCAACCAGGACGACGCGGTGGAAGTCCGTCGCCAGCTCGCCGCGCTCTGG
ACCCGCCTGCCGGAGGTGGAAGGCCTGCTGGCAAGCCGCGCGGCCTCGCCGCTGGCCCTGCACGGCAGCCTGCTGGGCCT
GGCCGGGGCCTGGGCGGCGCTCGATCCGCTGGCCGGCGTGCCGGCCTTCGAAGCGCTCGACTTCCTCGACCTGCGGCGTG
GCTACGAGCCGCTGCTGGACTGGCTGGAGCGCGCCATCGAGTCGATCCGCGCGGGCTACCGCTGCCTGCCGTTCGAGCAG
GAGGAACAGGTATTTTCCGTGCGCCTGCCCGATCCGGCGCCGCGTCAGCGCCTGGTGGTCGGCCTGCGGATGCCCGCCGG
CGCCGGCGAACAAGCGGCGGCTGACTGGCTGGAGCGCGCCATCGTCGCCTCCGACCCGCACCTGCCGTTGCTCGCCCGGC
AACGCATGAGCGGGCTGGCGCGGCAGCCGATGAATCGCCAGGAACAGGTGGCCTACAGCGTCGGCGACGACACCCGTTTG
TTCGTCGTGCAGGGCGTCGGCGACTGGTTCGATGCCGGCCAGCCGCTGCGCATCGTCGCGCCGGTCAGCGGGGTCGCCAG
CAGTCCCTGGCAGATCGTGCTGTTCGTCGCCGACGGCAGCGACAACACCTAG