SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP001472
Component protein type	TssD
T6SS ID (Type)	T6SS00151 (Type i4a)
Strain	Pseudomonas aeruginosa UCBPP-PA14
Replicon	chromosome
Sequence	Protein sequence (166 a.a.); Nucleotide sequence (498 bp)
Reference	[1] Barret M, Egan F, Fargier E, et al. Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology (Reading). 2011 Jun;157(Pt 6):1726-1739. doi: 10.1099/mic.0.048645-0. Epub 2011 Apr 7. PMID: 21474537 [2] Lesic B, Starkey M, He J, et al. Quorum sensing differentially regulates Pseudomonas aeruginosa type VI secretion locus I and homologous loci II and III, which are required for pathogenesis. Microbiology (Reading). 2009 Sep;155(Pt 9):2845-2855. doi: 10.1099/mic.0.029082-0. Epub 2009 Jun 4. PMID: 19497948

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PA14_RS13885
Coordinate (Strand)	3027086..3027583 (-)
NCBI ID	WP_003089495.1
RefSeq	NC_008463
Uniprot ID	V6AEM9_PSEAI, A0A1C7BL22_PSEAI, A0A1F0I5Y8_9PSED, A0A0H2ZBE0_PSEAB, Q9I1B2_PSEAE, A0A6N0KLI4_9PSED, A0A069PXC4_PSEAI, A0A3S4PDJ8_PSEFL, A6V5B9_PSEA7
KEGG ID	pau:PA14_34030, pae:PA2367, pap:PSPA7_2894
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	8.8e-29	11..138

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-165	MDAIILDFGSDIKGDSLLVGYENKIEIMSYSHNVAMQVTNDVSNSERTSGKPHVGEFTLTKFIDTSTPTLNEYCCAGKPIAEATITIGRNAAEGNGQIMPFIVYTLNNVVLSNVSVSGGAGGKPVETLSLNFTKIKWELTAQKDDGTKEGTAASTWDLAANQLVK

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9899	-	-

Protein sequence: 166 a.a.

						>T6CP001472 NC_008463:c3027583-3027086 [Pseudomonas aeruginosa UCBPP-PA14] [TssD]
MDAIILDFGSDIKGDSLLVGYENKIEIMSYSHNVAMQVTNDVSNSERTSGKPHVGEFTLTKFIDTSTPTLNEYCCAGKPI
AEATITIGRNAAEGNGQIMPFIVYTLNNVVLSNVSVSGGAGGKPVETLSLNFTKIKWELTAQKDDGTKEGTAASTWDLAA
NQLVK*					

Nucleotide sequence: 498 bp

						>T6CP001472 NC_008463:c3027583-3027086 [Pseudomonas aeruginosa UCBPP-PA14] [TssD]
ATGGATGCGATCATTCTCGATTTCGGCAGCGACATCAAAGGCGACAGCCTGCTCGTCGGCTACGAAAACAAGATCGAAAT
CATGTCCTACAGCCACAACGTGGCGATGCAGGTCACCAACGACGTCAGCAACTCGGAGCGCACCTCCGGCAAACCCCACG
TCGGCGAATTCACCCTCACCAAGTTCATCGACACCTCGACCCCGACCCTCAACGAATACTGCTGCGCCGGCAAGCCGATC
GCCGAGGCGACCATCACCATCGGCCGCAACGCCGCCGAGGGCAACGGGCAGATCATGCCCTTCATCGTCTACACCCTGAA
CAACGTGGTGCTCTCCAACGTCAGCGTCAGCGGCGGCGCCGGCGGCAAGCCGGTGGAGACCCTGTCGCTGAACTTCACCA
AGATCAAGTGGGAGCTGACCGCGCAGAAGGACGACGGCACCAAGGAAGGCACGGCCGCCTCGACCTGGGACCTGGCCGCC
AACCAGTTGGTCAAGTGA					