Detailed information of component protein


Summary

Component ID T6CP001470
Component protein type TssG
T6SS ID (Type) T6SS00151 experimental (Type i4a)
Strain Pseudomonas aeruginosa UCBPP-PA14
Replicon chromosome
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PA14_RS13870
Coordinate (Strand) 3023891..3024907 (-)
NCBI ID WP_003139313.1
RefSeq NC_008463
Uniprot ID A0A0H2ZB57_PSEAB
KEGG ID pau:PA14_34000
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.4e-74 20..317

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-338 MATPGRLAALPLSQRLRRTPQRFELLQALLLLERERPQALPLGTGNAPRAEALRLRGPLLPLFASSEVESLLDDPQQPVLSTPVFGLGGPDGPLPYAYQEWLQQRSRQKDHAPAEFLDLFQHRLLSLLYRVLRKHRVALGFAVPAATPVQAQLRALSGLLPKALQERLALPDSAVLARTALFAGGRRSLAGFAGLVRQHFGVEARLDAYQGAWKEIPAASRSRLQRGGRNLRLGRDAIAGTRTWDEHAGIALSLGPLDAREAARFFPDGDAHGQLASLAALYFGPDLDCRLSLLVSGGAPLRLERGAPPRLSWNTGLRRVEDGQRQRIDLDLRQPEVA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8872 - -



  Protein sequence: 339 a.a.    

>T6CP001470 NC_008463:c3024907-3023891 [Pseudomonas aeruginosa UCBPP-PA14] [TssG]
MATPGRLAALPLSQRLRRTPQRFELLQALLLLERERPQALPLGTGNAPRAEALRLRGPLLPLFASSEVESLLDDPQQPVL
STPVFGLGGPDGPLPYAYQEWLQQRSRQKDHAPAEFLDLFQHRLLSLLYRVLRKHRVALGFAVPAATPVQAQLRALSGLL
PKALQERLALPDSAVLARTALFAGGRRSLAGFAGLVRQHFGVEARLDAYQGAWKEIPAASRSRLQRGGRNLRLGRDAIAG
TRTWDEHAGIALSLGPLDAREAARFFPDGDAHGQLASLAALYFGPDLDCRLSLLVSGGAPLRLERGAPPRLSWNTGLRRV
EDGQRQRIDLDLRQPEVA*

  Nucleotide sequence: 1017 bp    

>T6CP001470 NC_008463:c3024907-3023891 [Pseudomonas aeruginosa UCBPP-PA14] [TssG]
ATGGCAACCCCAGGCCGGCTCGCCGCTCTCCCTCTGAGCCAACGGCTGCGCCGCACGCCGCAGCGCTTCGAACTGTTGCA
GGCGCTGCTGCTGCTCGAACGCGAGCGTCCCCAGGCGTTGCCGCTGGGCACCGGCAACGCGCCGCGGGCGGAGGCCCTGC
GCCTGCGCGGGCCGCTGCTGCCGCTGTTCGCCTCGAGCGAGGTGGAAAGCCTGCTCGACGACCCGCAGCAACCGGTGCTG
TCCACCCCGGTGTTCGGCCTCGGCGGCCCCGACGGCCCGTTGCCCTATGCCTACCAGGAATGGCTGCAACAGCGTTCCCG
GCAGAAGGACCATGCCCCCGCCGAGTTCCTCGACCTGTTCCAGCACCGCCTGCTCAGCCTGCTCTACCGGGTGCTGCGCA
AGCATCGCGTGGCGCTCGGTTTCGCGGTGCCGGCGGCGACCCCGGTGCAGGCGCAGCTACGCGCCCTCAGCGGCCTGTTG
CCGAAAGCCCTGCAAGAGCGCCTGGCGCTGCCGGACAGCGCGGTACTGGCACGCACCGCGCTGTTCGCCGGCGGGCGTCG
CTCCCTGGCCGGCTTCGCCGGCCTGGTGCGCCAGCATTTCGGCGTGGAGGCACGGCTGGACGCCTACCAGGGCGCCTGGA
AGGAAATCCCCGCGGCCAGCCGCAGCCGGCTGCAACGCGGCGGACGCAACCTGCGCCTGGGTCGCGACGCCATAGCCGGC
ACGCGCACCTGGGACGAGCACGCCGGCATCGCCCTCAGTCTCGGTCCGCTGGATGCCCGCGAAGCCGCCCGCTTCTTCCC
CGACGGCGACGCCCATGGCCAGTTGGCCAGCCTCGCCGCGCTGTACTTCGGCCCCGACCTGGATTGTCGCCTGAGCCTGC
TGGTGAGCGGCGGCGCGCCGCTGCGCCTGGAGCGCGGTGCACCGCCCAGGCTGAGCTGGAACACCGGCCTGCGGCGCGTC
GAAGACGGCCAGCGGCAGCGCATCGATCTCGACCTGCGGCAGCCGGAGGTAGCCTGA