Detailed information of component protein


Summary

Component ID T6CP001468
Component protein type TssI
T6SS ID (Type) T6SS00151 experimental (Type i4a)
Strain Pseudomonas aeruginosa UCBPP-PA14
Replicon chromosome
Sequence Protein sequence (669 a.a.); Nucleotide sequence (2007 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PA14_RS13850
Coordinate (Strand) 3017584..3019590 (-)
NCBI ID WP_003139309.1
RefSeq NC_008463
Uniprot ID A0A0H2ZA51_PSEAB
KEGG ID pau:PA14_33960
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.3e-84 30..322
Phage_base_V PF04717.14 1.5e-16 367..435
Gp5_C PF06715.14 4.7e-06 560..583
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-668 MPRPTDSNTSLSLTASALAALFPERLAGEERLNALPGWELLGYSASPLALDGAIATHLTATLHNDADQRPLDGLVAEIRQLPGDASAERYQVLLRPWLWWLTLASNNRVFQNLATSDIVTQVFDQHGFSDYQLQLSGSYQPREYCVQYGESDLAFVSRLLEEDGIFWFFTHAAGKHTLVLADSNDAFPPIPNGPQVAYLGQGIGVRELQGVRSAQYSLQAVSGTYSATDYEFTTPSTSLYSQAEAVSGAAGVYQHPGGYTAKAQGDSLTKQRIDGLRSQETRLIGESDCRWLVPGHWFTLSGHDDDSLNIDWVLTSVTHDASHAHYRNRFEAIPKATAYRPARVTPKPRMHTQTALVVGKAGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPDNQTQSGIKTNSSKGGGGFNELRFEDKKDAEEVFLQAQKDLNVNVLNDSTASIGHDETLTVQNARTRTVKEGDETVTLEKGKRSVTIQTGSDSLDVKDTRTVTVGADQTHSTGGNYSHKVSGDFELTVDGNLTIKVSGTLALQSGGSLTLKSDADLAAQAGTSLTSKAGTSLTNQAGTSLTNKAGTSLTNDAGVSLTNKAGAEQTVDGGGMLTIKGGLVKVN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7785 - -


  Protein sequence: 669 a.a.    

>T6CP001468 NC_008463:c3019590-3017584 [Pseudomonas aeruginosa UCBPP-PA14] [TssI]
MPRPTDSNTSLSLTASALAALFPERLAGEERLNALPGWELLGYSASPLALDGAIATHLTATLHNDADQRPLDGLVAEIRQ
LPGDASAERYQVLLRPWLWWLTLASNNRVFQNLATSDIVTQVFDQHGFSDYQLQLSGSYQPREYCVQYGESDLAFVSRLL
EEDGIFWFFTHAAGKHTLVLADSNDAFPPIPNGPQVAYLGQGIGVRELQGVRSAQYSLQAVSGTYSATDYEFTTPSTSLY
SQAEAVSGAAGVYQHPGGYTAKAQGDSLTKQRIDGLRSQETRLIGESDCRWLVPGHWFTLSGHDDDSLNIDWVLTSVTHD
ASHAHYRNRFEAIPKATAYRPARVTPKPRMHTQTALVVGKAGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVVLPWS
GKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPDNQTQSGIKTNSSKGGGGFNELRFEDKKDAEEVF
LQAQKDLNVNVLNDSTASIGHDETLTVQNARTRTVKEGDETVTLEKGKRSVTIQTGSDSLDVKDTRTVTVGADQTHSTGG
NYSHKVSGDFELTVDGNLTIKVSGTLALQSGGSLTLKSDADLAAQAGTSLTSKAGTSLTNQAGTSLTNKAGTSLTNDAGV
SLTNKAGAEQTVDGGGMLTIKGGLVKVN*

  Nucleotide sequence: 2007 bp    

>T6CP001468 NC_008463:c3019590-3017584 [Pseudomonas aeruginosa UCBPP-PA14] [TssI]
ATGCCCCGTCCCACCGATAGCAATACCAGCCTCTCCCTGACCGCCTCGGCGCTGGCAGCCCTGTTCCCGGAGCGTCTGGC
CGGGGAAGAACGCCTGAACGCACTGCCCGGTTGGGAACTGCTGGGCTACAGCGCCAGCCCCTTAGCCCTGGACGGCGCAA
TCGCCACCCATCTCACCGCCACCCTGCACAACGACGCCGACCAGCGTCCGCTCGACGGCCTGGTCGCGGAGATCCGCCAA
CTCCCCGGCGATGCCAGCGCCGAGCGCTACCAGGTGCTGTTGCGCCCCTGGCTCTGGTGGCTGACGCTGGCCAGCAACAA
CCGGGTGTTCCAGAACCTGGCCACCAGCGACATCGTCACCCAGGTCTTCGACCAGCACGGCTTCAGCGACTACCAGTTGC
AGCTCAGCGGCAGCTACCAGCCCCGCGAATACTGCGTGCAGTACGGCGAGAGCGACCTTGCCTTCGTCTCGCGGCTGCTG
GAGGAAGACGGCATTTTCTGGTTCTTCACCCATGCCGCCGGCAAGCACACCCTGGTGCTGGCCGACAGCAACGACGCCTT
CCCGCCGATTCCCAACGGCCCGCAAGTGGCCTACCTGGGCCAAGGAATCGGCGTGCGCGAGTTGCAGGGCGTGCGTTCGG
CGCAGTACAGCCTCCAGGCGGTATCCGGGACCTACAGCGCCACCGACTACGAGTTCACCACCCCGAGCACCTCGCTGTAC
TCCCAGGCCGAGGCGGTCTCCGGCGCCGCCGGCGTCTACCAGCACCCCGGCGGCTACACCGCCAAGGCCCAGGGCGACAG
CCTGACCAAGCAACGCATCGACGGCCTGCGCAGCCAGGAGACGCGCCTGATCGGCGAGAGCGACTGCCGCTGGCTGGTGC
CCGGCCACTGGTTCACCCTCAGCGGGCATGACGACGATTCGCTGAATATCGACTGGGTGCTGACCTCGGTCACCCATGAC
GCCAGTCACGCGCACTACCGCAACCGCTTCGAGGCGATCCCCAAGGCCACCGCCTACCGCCCCGCGCGGGTCACGCCCAA
GCCACGCATGCACACCCAGACCGCCCTGGTGGTGGGCAAGGCCGGCGAGGAGATCTGGACCGACCAGTACGGCCGGATCA
AGATCCAGTTCCCCTGGGACCGCGACGGCAAGAACGACGAGACCTCCTCCTGCTGGGTGCGCGTGGTGCTGCCCTGGAGC
GGCAAGGGCTTCGGCATGCAGTTCGTGCCGCGCATCGGCCAGGAAGTGATCGTCACCTTCATCGACGGCGACCCGGACCG
CCCGCTGGTCACCGGCTGCGTCTACAACGGCGACAACGCCCTGCCCTACGCGCTGCCGGACAACCAGACGCAGTCCGGGA
TCAAGACCAACTCGTCGAAGGGCGGCGGCGGTTTCAACGAGCTGCGCTTCGAGGACAAGAAGGACGCCGAGGAAGTCTTC
CTCCAGGCGCAGAAGGACCTCAACGTCAACGTGCTCAACGACAGCACCGCCAGCATCGGCCACGACGAGACCCTGACGGT
GCAGAACGCCCGCACCCGCACGGTGAAGGAAGGCGACGAGACCGTCACCCTGGAGAAAGGCAAGCGCAGCGTGACCATCC
AGACCGGCAGCGACAGTCTGGATGTGAAGGACACGCGCACGGTGACGGTGGGCGCCGACCAGACCCACAGCACCGGCGGC
AACTACAGCCACAAGGTCAGCGGCGACTTCGAGCTGACGGTGGACGGCAACCTGACCATCAAGGTCAGCGGCACCCTCGC
CCTGCAGAGCGGCGGCAGCCTGACCCTGAAGAGCGACGCCGACCTCGCCGCCCAGGCCGGCACCTCGCTGACCAGCAAGG
CCGGGACGTCGCTGACCAACCAGGCCGGCACCTCCCTCACCAACAAGGCCGGCACCAGCCTGACCAACGATGCCGGCGTC
AGCCTGACCAACAAGGCCGGCGCCGAACAGACGGTGGACGGCGGCGGCATGCTGACCATCAAGGGCGGTCTGGTAAAGGT
CAACTGA