Detailed information of component protein


Summary

Component ID T6CP001243
Component protein type TssH
T6SS ID (Type) T6SS00127 experimental (Type i1)
Strain Myxococcus xanthus DK 1622
Replicon chromosome
Sequence Protein sequence (807 a.a.); Nucleotide sequence (2421 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) MXAN_RS23480
Coordinate (Strand) 6046572..6048992 (-)
NCBI ID WP_202945165.1
RefSeq NC_008095
Uniprot ID UPI001930CBC1
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 8.5e-55 527..691
AAA_lid_9 PF17871.3 1.1e-30 335..429
ClpB_D2-small PF10431.11 5.8e-24 698..777
AAA PF00004.31 1.1e-15 195..326
Clp_N PF02861.22 3.4e-12 88..139
Clp_N PF02861.22 1.1e-08 16..65
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-806 ITEAFSDETRRVLEAAFEAARSAGAASIDTEHLLVALAKDPLGRTALSRMKLDPARVAERAESEMRRGKRPMERPELSPHAKRALELAYQEAYELGHSYVGPEHVLLGLLHEGEGLASEILREQGAQHGKARAAVAEALAPSSEARRSPTPTLDEYCRDLTSLASEGKLDPVVGRANEIETTLEILSRRTKNNPVLIGEPGVGKTAIVEGIAQRIISAAVPDTLRDKRVLQLDLSGLLAGSKYRGEFEERLKKVMDEVKSHSEDIVLFIDEIHTIVGAGAAEGAMDAGNMLKPSLARGELHVIGATTLDEYRKRIEKDAALERRFQPVVVPEPTAEQAIEILRGLKDRYESHHRVRIADEALVAAVELSDRYVTGRFLPDKAIDLVDQAAARVRLRLTLPPERLVNAEHEVVKVKRSLDEARGRKAGPRIQELESKLNAAEREVQSAQKERRTQKSGETPEVRAEDVAEVLSRMTGIPVTQMTEDERKKLLELESRLHERVIGQDEAIRVLSQAIRRARAGLKDESRPIGSFLFLGPTGVGKTELAKTLAELLFGDEKALIRFDMSEYMEKHTVSRLVGAPPGYVGYEEGGQLTEAVRRRPYSVLLFDEVEKAHPDVFHMLLQVLDDGRLTDAQGTVVNFKNTVIIGTSNLGSHLIQESTARKEPQERMRERVMGVLKGHFPPEFLNRIDETVVFEPLNRAQLRAIVDLMLEKTRRLLHGQGIDLEVTPAALEALVDKGWDPTFGARPLRREIQRAIEAPLAEKLISGDIHENSRVRADFKDGKFRFDEVEAAEAEVAQAEASAVH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8786 - -


  Protein sequence: 807 a.a.    

>T6CP001243 NC_008095:c6048992-6046572 [Myxococcus xanthus DK 1622] [TssH]
ITEAFSDETRRVLEAAFEAARSAGAASIDTEHLLVALAKDPLGRTALSRMKLDPARVAERAESEMRRGKRPMERPELSPH
AKRALELAYQEAYELGHSYVGPEHVLLGLLHEGEGLASEILREQGAQHGKARAAVAEALAPSSEARRSPTPTLDEYCRDL
TSLASEGKLDPVVGRANEIETTLEILSRRTKNNPVLIGEPGVGKTAIVEGIAQRIISAAVPDTLRDKRVLQLDLSGLLAG
SKYRGEFEERLKKVMDEVKSHSEDIVLFIDEIHTIVGAGAAEGAMDAGNMLKPSLARGELHVIGATTLDEYRKRIEKDAA
LERRFQPVVVPEPTAEQAIEILRGLKDRYESHHRVRIADEALVAAVELSDRYVTGRFLPDKAIDLVDQAAARVRLRLTLP
PERLVNAEHEVVKVKRSLDEARGRKAGPRIQELESKLNAAEREVQSAQKERRTQKSGETPEVRAEDVAEVLSRMTGIPVT
QMTEDERKKLLELESRLHERVIGQDEAIRVLSQAIRRARAGLKDESRPIGSFLFLGPTGVGKTELAKTLAELLFGDEKAL
IRFDMSEYMEKHTVSRLVGAPPGYVGYEEGGQLTEAVRRRPYSVLLFDEVEKAHPDVFHMLLQVLDDGRLTDAQGTVVNF
KNTVIIGTSNLGSHLIQESTARKEPQERMRERVMGVLKGHFPPEFLNRIDETVVFEPLNRAQLRAIVDLMLEKTRRLLHG
QGIDLEVTPAALEALVDKGWDPTFGARPLRREIQRAIEAPLAEKLISGDIHENSRVRADFKDGKFRFDEVEAAEAEVAQA
EASAVH*

  Nucleotide sequence: 2421 bp    

>T6CP001243 NC_008095:c6048992-6046572 [Myxococcus xanthus DK 1622] [TssH]
ATCACCGAGGCCTTCTCCGATGAGACGCGGCGCGTATTGGAAGCGGCCTTCGAGGCGGCGCGAAGCGCGGGGGCGGCTTC
CATCGACACGGAGCACCTGCTGGTGGCGCTCGCGAAGGACCCGCTGGGCCGGACCGCGCTCAGCCGCATGAAGCTGGACC
CGGCCCGCGTCGCCGAGCGCGCCGAGTCCGAGATGCGCCGTGGGAAGCGCCCCATGGAGCGTCCCGAGCTGTCGCCGCAT
GCGAAGCGCGCCCTGGAACTCGCGTACCAGGAGGCCTACGAGCTGGGACATTCCTATGTGGGGCCCGAACACGTGCTGCT
GGGGTTGCTGCACGAAGGGGAAGGCCTGGCGTCGGAGATTCTGCGCGAGCAAGGGGCCCAGCACGGCAAGGCGCGCGCGG
CCGTCGCGGAAGCGCTGGCACCTTCATCCGAGGCACGCCGGTCGCCCACGCCCACGCTGGACGAGTACTGCCGCGACCTG
ACGAGCCTGGCCTCGGAAGGGAAGCTGGACCCGGTGGTGGGGCGGGCCAACGAAATCGAGACCACGCTCGAAATCCTCTC
GCGTCGTACGAAGAACAACCCCGTGCTCATTGGTGAGCCGGGCGTGGGCAAGACGGCCATCGTGGAGGGCATTGCCCAGC
GCATCATCTCCGCCGCGGTCCCGGACACGCTGCGCGACAAACGCGTGCTGCAACTGGACCTGTCCGGCCTGCTCGCGGGC
AGCAAGTACCGCGGTGAGTTCGAGGAGCGGCTGAAGAAGGTCATGGACGAGGTGAAGTCGCACAGCGAGGACATCGTCCT
CTTCATCGACGAGATTCACACCATCGTCGGGGCGGGCGCGGCGGAGGGGGCCATGGATGCGGGCAACATGCTCAAGCCAT
CCCTGGCGCGCGGCGAGCTGCACGTCATCGGCGCGACGACGTTGGATGAATACCGCAAGCGCATCGAGAAGGATGCTGCG
CTCGAACGCCGCTTCCAGCCCGTGGTCGTCCCGGAGCCGACGGCCGAGCAGGCCATTGAGATTCTGCGAGGCCTCAAGGA
CCGCTACGAGTCCCACCACCGCGTGCGCATCGCGGACGAGGCGCTGGTGGCGGCGGTGGAGCTGTCGGACCGTTACGTCA
CAGGGCGCTTCCTGCCGGACAAGGCCATCGACCTGGTGGACCAGGCGGCGGCCCGCGTGCGCTTGCGGCTCACGCTGCCA
CCGGAGCGACTGGTGAATGCCGAGCATGAGGTGGTGAAGGTGAAGCGCTCGCTCGACGAGGCTCGCGGCCGGAAGGCGGG
GCCGCGCATCCAGGAGCTGGAGTCGAAGCTGAACGCCGCCGAGCGCGAGGTCCAGAGCGCGCAGAAGGAGCGCCGCACGC
AGAAGTCCGGTGAGACGCCGGAGGTCCGCGCCGAGGACGTGGCGGAGGTGCTGTCGCGCATGACGGGCATCCCCGTGACG
CAGATGACGGAGGACGAGCGCAAGAAGCTGCTGGAGCTGGAGTCGCGGCTGCACGAGCGCGTCATCGGTCAGGACGAGGC
CATCCGCGTGTTGTCCCAGGCCATCCGGCGGGCGAGGGCGGGGCTCAAGGACGAGTCGCGCCCCATCGGCTCCTTCCTCT
TCCTGGGCCCCACGGGCGTGGGCAAGACGGAGTTGGCGAAGACGCTGGCGGAGCTGCTCTTCGGTGACGAGAAGGCGCTC
ATCCGCTTCGACATGAGTGAGTACATGGAGAAGCACACCGTGAGCCGGCTGGTGGGCGCGCCGCCGGGCTATGTCGGCTA
CGAGGAGGGCGGGCAGCTCACCGAGGCCGTGCGGCGGCGGCCCTACTCCGTGCTCCTCTTCGACGAGGTGGAGAAGGCCC
ACCCCGACGTGTTCCACATGCTGCTCCAGGTGCTGGATGACGGGCGGCTCACGGACGCGCAGGGCACGGTGGTGAACTTC
AAGAACACCGTCATCATCGGCACCAGCAACCTGGGCTCGCACCTCATCCAGGAGTCCACCGCGCGCAAGGAACCGCAGGA
GCGCATGCGGGAGCGCGTCATGGGCGTGCTCAAGGGGCACTTCCCGCCCGAGTTCCTCAACCGCATCGACGAGACGGTGG
TCTTCGAGCCGCTCAACCGCGCGCAGCTGCGCGCCATCGTGGACCTGATGCTGGAGAAGACGCGCCGCCTGCTGCACGGC
CAGGGCATTGACCTGGAGGTGACGCCCGCGGCGCTGGAAGCGCTGGTGGACAAGGGATGGGACCCAACCTTCGGCGCGCG
TCCGCTGCGGCGTGAAATCCAGCGCGCCATCGAGGCGCCACTCGCGGAGAAGCTCATCTCGGGCGACATCCATGAGAACA
GCCGCGTGAGAGCGGACTTCAAGGACGGAAAATTCCGGTTCGACGAAGTGGAGGCCGCTGAGGCGGAAGTCGCGCAGGCT
GAAGCGAGTGCCGTTCACTGA